RNA id: TU111732



Basic Information


Item Value
RNA id TU111732
length 663
lncRNA type intronic
GC content 0.39
exon number 2
gene id G100443
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91093702 ~ 91094427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTGGGCCACTCCAGGAAGTGatgttgcaggctagctcagtgttgCCTCCTCATTGAGTAACTCTAGTTTAAGGCTGACcagggtactgcaggctgccattagcaactaaaATATCCTTCACttctgtgtgtgatttttttaaataatcggttcaaggacatacatctgtTGTGTTAGAAGCAATTATTAATACCATGATTGTCATCTAAACATTTTATTTACACTAAGATTGATCACAAAGATTGACGTTTTTCCATTGATTATAATGTGTTCTGTTTTCTGAgaacaatgcctgcagtaccgcAGTCGGCTTTGAATATCCTTGGTTTCAATGAGAAGGGGCAGTCGTCCTCCCCTAATTACAATTCAGACCTGCAATTGACTTCCAAGCAAAGATGACTCTACAACATTACCCTTCTAGAACCATGATGACGTTACAACATTACTCTTCTAGAACCATGATGACATTACAACATTACCCTTCTAGAACCATGATGACGTTACAACATTACTCTTCTAGAACCATGATGACATTACAACATTACCCTTCTAGAACCATGATGACATTACAACATTACTCTTCTAGAACCATGATGACGCTACAACATTACTCTTCTAGAACCATGATGACATTACAACATTACTCTTCTAGAACCATGACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111731 lncRNA downstream 4613 91088710 ~ 91089089 (-) True G100442
TU111730 lncRNA downstream 5598 91087805 ~ 91088104 (-) True G100441
TU111688 lncRNA downstream 5940 91086856 ~ 91087762 (-) True G100416
TU111687 lncRNA downstream 7162 91085890 ~ 91086540 (-) True G100415
TU111719 lncRNA downstream 22294 91071168 ~ 91071408 (-) True G100435
TU111741 lncRNA upstream 6167 91100594 ~ 91101188 (-) True G100445
TU111742 lncRNA upstream 8248 91102675 ~ 91102960 (-) True G100446
TU111691 lncRNA upstream 11016 91105443 ~ 91107034 (-) True LOC110531579
TU111744 lncRNA upstream 14882 91109309 ~ 91110819 (-) True G100448
TU111746 lncRNA upstream 18417 91112844 ~ 91113285 (-) True G100450
XM_036988637.1 mRNA downstream 20986 90983267 ~ 91072716 (-) False LOC110516041
XM_036988676.1 mRNA upstream 222741 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 222741 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 222741 91317168 ~ 91530446 (-) False LOC118966091
XM_036988692.1 mRNA upstream 222741 91317168 ~ 91530447 (-) False LOC118966091
XM_036988702.1 mRNA upstream 699191 91793618 ~ 91832379 (-) False LOC110531398
TU111641 other downstream 108533 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 237136 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 237136 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 237359 90854955 ~ 90856343 (-) True G100197
TU111325 other downstream 311305 90781020 ~ 90782397 (-) False G100197
TU111909 other upstream 138313 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 698152 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1497154 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1542871 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1644586 92739013 ~ 92739530 (-) True G102119

Expression Profile