RNA id: TU111746


Basic Information

Item Value
RNA id TU111746
length 402
lncRNA type intronic
GC content 0.43
exon number 2
gene id G100450
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91112844 ~ 91113285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCGGTCAAGATTTTCTCAATGGTggcagtggttagagctttggactagtaaccggaaggttgcaagttcaaatccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccattgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgaaaaTCACTGAAAATCTGCATACAACCCTAATTACAACCCTAATTGAACCTCTGGCTGTTGGTTGTTTAAAGGCTGTAGTAGGTCATCTTGGTTGGAACCTCTGGCTGTTGGTTGTTTAAAGGCTGTAGTAGGCCATCTTGGTTGTAACCTCTGGTTGTTGGTTGTGtttagagctgtgttgtgaataCAGTATCTGCTGTAGGgccatataaatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111744 lncRNA downstream 2025 91109309 ~ 91110819 (-) True G100448
TU111691 lncRNA downstream 5810 91105443 ~ 91107034 (-) True LOC110531579
TU111742 lncRNA downstream 9884 91102675 ~ 91102960 (-) True G100446
TU111741 lncRNA downstream 11656 91100594 ~ 91101188 (-) True G100445
TU111732 lncRNA downstream 18417 91093702 ~ 91094427 (-) True G100443
TU111754 lncRNA upstream 8758 91122043 ~ 91122276 (-) True G100457
TU111759 lncRNA upstream 13585 91126870 ~ 91127294 (-) True G100462
TU111941 lncRNA upstream 173744 91287029 ~ 91287766 (-) True G100611
TU112155 lncRNA upstream 265747 91379032 ~ 91379936 (-) True G100777
TU112160 lncRNA upstream 287729 91401014 ~ 91401652 (-) False G100781
XM_036988637.1 mRNA downstream 40128 90983267 ~ 91072716 (-) False LOC110516041
XM_036988676.1 mRNA upstream 203883 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 203883 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 203883 91317168 ~ 91530446 (-) False LOC118966091
XM_036988692.1 mRNA upstream 203883 91317168 ~ 91530447 (-) False LOC118966091
XM_036988702.1 mRNA upstream 680333 91793618 ~ 91832379 (-) False LOC110531398
TU111641 other downstream 127675 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 256278 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 256278 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 256501 90854955 ~ 90856343 (-) True G100197
TU111325 other downstream 330447 90781020 ~ 90782397 (-) False G100197
TU111909 other upstream 119455 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 679294 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1478296 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1524013 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1625728 92739013 ~ 92739530 (-) True G102119

Expression Profile