RNA id: TU111909


Basic Information

Item Value
RNA id TU111909
length 701
RNA type TUCP
GC content 0.37
exon number 2
gene id G100582
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91232740 ~ 91233788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actattactgctactactactactactactactactactactactactgctactactactgctactactgctactactgctactactactactgctactactgctactactactactactgctactactactactactactgctactactactactactactactgctactactactactactactactactactactgctgctactactactactactactgctactactactgctactactactgctactactactactaatgctgctgcTAATAtcactactgatactactactactactacttctactgctactgttactactgctgctactactactgctgctgatactactgctgatactattacaactactactgatactactactattacgaatactactacagctactaatactgatactactactactcctgctgatgatattgctactactactactactacagctactaatactgatactactactactcctgctgatgatattgctactactactactacagctactaatactgatactactactactcctgctgatgatattgctactactactactactacagctactaatactgatactactactactcctgctgatgatattgctactactacagctactaatattgatactactactactactactactactactactactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111759 lncRNA downstream 105446 91126870 ~ 91127294 (-) True G100462
TU111754 lncRNA downstream 110464 91122043 ~ 91122276 (-) True G100457
TU111746 lncRNA downstream 119455 91112844 ~ 91113285 (-) True G100450
TU111744 lncRNA downstream 121921 91109309 ~ 91110819 (-) True G100448
TU111691 lncRNA downstream 125706 91105443 ~ 91107034 (-) True LOC110531579
TU111941 lncRNA upstream 53241 91287029 ~ 91287766 (-) True G100611
TU112155 lncRNA upstream 145244 91379032 ~ 91379936 (-) True G100777
TU112160 lncRNA upstream 167226 91401014 ~ 91401652 (-) False G100781
TU112161 lncRNA upstream 167226 91401014 ~ 91401652 (-) True G100781
TU112164 lncRNA upstream 174826 91408614 ~ 91409376 (-) True G100784
XM_036988670.1 mRNA downstream 113361 91091419 ~ 91119379 (-) False LOC110531579
XM_036988668.1 mRNA downstream 113619 91090411 ~ 91119121 (-) False LOC110531579
XM_036988630.1 mRNA downstream 160024 90983267 ~ 91072716 (-) False LOC110516041
XM_036988631.1 mRNA downstream 160024 90983267 ~ 91072716 (-) False LOC110516041
XM_036988636.1 mRNA downstream 160024 90983267 ~ 91072716 (-) False LOC110516041
XM_036988676.1 mRNA upstream 83380 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 83380 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 83380 91317168 ~ 91530446 (-) False LOC118966091
XM_036988692.1 mRNA upstream 83380 91317168 ~ 91530447 (-) False LOC118966091
XM_036988702.1 mRNA upstream 559830 91793618 ~ 91832379 (-) False LOC110531398
TU111641 other downstream 247571 90982735 ~ 90985169 (-) True LOC110516041
TU111268 other downstream 373768 90629672 ~ 90858972 (-) False G100197
TU111293 other downstream 376174 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 376174 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 376397 90854955 ~ 90856343 (-) True G100197
TU112492 other upstream 558791 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1357793 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1403510 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1505225 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 1639781 92873569 ~ 92874498 (-) True G102158

Expression Profile