RNA id: TU112287


Basic Information

Item Value
RNA id TU112287
length 422
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G100901
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91611154 ~ 91611575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCATTCTACAGTCTACTGACAAAATGGTCTCATTCTTCCTCATTTTTCAgattacaagcctgaaacaatgtctaaagactgttgacatctagtggaagccatagaaactgcaatctgggtcctaacccattacatactgtataggcattcaattgaaaagtaCCCACATCAAagatatcccacttcctggatagATTTTCCtcagatttttgcctgccatatcagttctgttatactcactgtcacaccctgaccatagagagcctttttattctctattttggttaggtcggggtgtgactagggtgggtaatctaggttgttttatttctatgttggcctggtatggttcccaatcagaggcagctgtttatcgttgtctctgattggggatcatatttagtcGGACATTTCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112285 lncRNA downstream 11025 91599885 ~ 91600129 (-) True G100899
TU112276 lncRNA downstream 16787 91594072 ~ 91594367 (-) True G100890
TU112270 lncRNA downstream 27416 91583468 ~ 91583738 (-) True G100884
TU112241 lncRNA downstream 48367 91562416 ~ 91562787 (-) True G100860
TU112112 lncRNA downstream 80930 91527845 ~ 91530224 (-) True LOC118966091
TU112300 lncRNA upstream 11726 91623301 ~ 91623521 (-) True G100912
TU112303 lncRNA upstream 16491 91628066 ~ 91628294 (-) True G100915
TU112309 lncRNA upstream 23614 91635189 ~ 91636254 (-) True G100921
TU112311 lncRNA upstream 29026 91640601 ~ 91641123 (-) True G100923
TU112333 lncRNA upstream 38481 91650056 ~ 91650469 (-) True G100932
XM_036988692.1 mRNA downstream 80707 91317168 ~ 91530447 (-) False LOC118966091
XM_036988676.1 mRNA downstream 80708 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA downstream 80708 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA downstream 80708 91317168 ~ 91530446 (-) False LOC118966091
XM_036988670.1 mRNA downstream 491775 91091419 ~ 91119379 (-) False LOC110531579
XM_036988702.1 mRNA upstream 182043 91793618 ~ 91832379 (-) False LOC110531398
XM_036990088.1 mRNA upstream 932314 92543889 ~ 92544887 (-) True LOC118966740
XM_036990094.1 mRNA upstream 1005481 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 1235889 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 1237465 92849040 ~ 92850414 (-) False LOC118966095
TU111909 other downstream 377366 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 625985 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 754588 90803445 ~ 90856566 (-) False G100197
TU112492 other upstream 181004 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 980006 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1025723 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1127438 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 1261994 92873569 ~ 92874498 (-) True G102158

Expression Profile