RNA id: TU112389



Basic Information


Item Value
RNA id TU112389
length 203
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G100974
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91708536 ~ 91708738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccagacctaatcccaattgagatgttgttgCAGGACTTGAAATgaacagttcatgcttgaaaacccacaaatgtcactGAGTTACAGCAGTTCTGTATGGAAGAGTTGGCCAAAATCCCTCCACAATGACATGAGAGattgatcaacaactacaggaagtgtttggttggagtcattgcagataaaggtggactgatcaacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112378 lncRNA downstream 8783 91699526 ~ 91699753 (-) True G100963
TU112376 lncRNA downstream 9768 91698351 ~ 91698768 (-) True G100961
TU112372 lncRNA downstream 16289 91688729 ~ 91692247 (-) True G100957
TU112359 lncRNA downstream 19940 91686899 ~ 91688596 (-) True G100953
TU112338 lncRNA downstream 49392 91655194 ~ 91659144 (-) False G100936
TU112502 lncRNA upstream 6678 91715416 ~ 91715862 (-) True G101030
TU112515 lncRNA upstream 26475 91735213 ~ 91735463 (-) True G101040
TU112516 lncRNA upstream 28252 91736990 ~ 91737236 (-) True G101041
TU112517 lncRNA upstream 31420 91740158 ~ 91740458 (-) True G101042
TU112520 lncRNA upstream 38415 91747153 ~ 91747392 (-) True G101045
XM_036988692.1 mRNA downstream 178089 91317168 ~ 91530447 (-) False LOC118966091
XM_036988676.1 mRNA downstream 178090 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA downstream 178090 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA downstream 178090 91317168 ~ 91530446 (-) False LOC118966091
XM_036988670.1 mRNA downstream 589157 91091419 ~ 91119379 (-) False LOC110531579
XM_036988702.1 mRNA upstream 84880 91793618 ~ 91832379 (-) False LOC110531398
XM_036990088.1 mRNA upstream 835151 92543889 ~ 92544887 (-) True LOC118966740
XM_036990094.1 mRNA upstream 908318 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 1138726 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 1140302 92849040 ~ 92850414 (-) False LOC118966095
TU111909 other downstream 474748 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 723367 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 851970 90803445 ~ 90856566 (-) False G100197
TU112492 other upstream 83841 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 882843 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 928560 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1030275 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 1164831 92873569 ~ 92874498 (-) True G102158

Expression Profile