RNA id: TU112532



Basic Information


Item Value
RNA id TU112532
length 293
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G101055
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91780584 ~ 91780876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtctAGTGTTATGATGAAGTGTAACCAGACAGGAACCAACCAGGACTCTCCATTTCCTAGTACAGTACAAGACACACAGGCTACGCCTTGGCTTGAAGAATAGATGACTTGATATTGAAATATTTACAAAGAAATGAACAGTCAACTGCCCTCAATTTTAACAAGACCATATTTCTGACGTCTATGGCATTTCATCGGCTTGGAATTCAAATTCCTTTCAGTCGTAAGAGGAATGCTGAGACGATACACTCTTTACAAATTCCCCTTGTTGCCTTATTGTGTAGAACTAATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112530 lncRNA downstream 17554 91762727 ~ 91763030 (-) True G101053
TU112529 lncRNA downstream 18865 91761459 ~ 91761719 (-) True G101052
TU112527 lncRNA downstream 21360 91758801 ~ 91759224 (-) True G101050
TU112526 lncRNA downstream 22222 91758124 ~ 91758362 (-) True G101049
TU112521 lncRNA downstream 32735 91747609 ~ 91747849 (-) True G101046
TU112533 lncRNA upstream 1706 91782582 ~ 91783277 (-) True G101056
TU112485 lncRNA upstream 10916 91791792 ~ 91797445 (-) False LOC110531398
TU112486 lncRNA upstream 10916 91791792 ~ 91797445 (-) False LOC110531398
TU112489 lncRNA upstream 10916 91791792 ~ 91797445 (-) False LOC110531398
TU112483 lncRNA upstream 11703 91792579 ~ 91797445 (-) False LOC110531398
XM_036988692.1 mRNA downstream 250137 91317168 ~ 91530447 (-) False LOC118966091
XM_036988676.1 mRNA downstream 250138 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA downstream 250138 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA downstream 250138 91317168 ~ 91530446 (-) False LOC118966091
XM_036988670.1 mRNA downstream 661205 91091419 ~ 91119379 (-) False LOC110531579
XM_036988702.1 mRNA upstream 12742 91793618 ~ 91832379 (-) False LOC110531398
XM_036990088.1 mRNA upstream 763013 92543889 ~ 92544887 (-) True LOC118966740
XM_036990094.1 mRNA upstream 836180 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 1066588 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 1068164 92849040 ~ 92850414 (-) False LOC118966095
TU111909 other downstream 546796 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 795415 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 924018 90803445 ~ 90856566 (-) False G100197
TU112492 other upstream 11703 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 810705 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 856422 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 958137 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 1092693 92873569 ~ 92874498 (-) True G102158

Expression Profile