RNA id: TU113810


Basic Information

Item Value
RNA id TU113810
length 1540
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id G102006
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 92527019 ~ 92531823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAATTACAGACTCAATGTTCAAATTCAACGCTTCATAGGTGAATTTATAGAGCAGCTCTAGTAGAGTGAACGAAgcaatggtgtttcagtaggtatgttagtcatagcatggggacagtatctaatggggtttcagtaggtatgttagtcacagcatggggacagtatctaatggtgtttcagtagttatgttagtcacagcatggacagtatctaatggtgtttcagtaggtatgttagtcatagcatggacagtatctaatggtgtttcagtaggtatgttagtcacagcatggggacagtatctaatggtgtttcagtaggtatgttagtcacagcatggacagtatctaatggtgtttcagtaggtatgttagtcacagcatggacagtatctaatggtgtttcagtaggtatgttagtcacagcatggggacagtatctaatggtgtttcagtaggtatgttagtcatagcatggacagtatctaatggtgtttcagtaggtatgttagtcatagcatggggacagtatctaatggtgtttcagtaggtatgttagtcacagcatggacagtatctaatggtgtttcagtagttatgttagtcatagcatggggacagtatctaatggggtttcagtagttatgttagtcacagcatggacagtatctaatggtgtttcagtagtcatagcatggacagtatctaatggtgtttcagtagttatgttagtcacagcatggacagtatctaatggtgtttcagaagttatgttagtcatagcatggacagtatctaatggtgtttcagtaggtatgttagtcatagcatggggacagtatctaatggggtttcagtagttatgttagtcatagcatggggacagtatctaatggtgtttcagtagttatgttagtcatagcatggggacagtatctaatggtgtttcagtagttatgttagtcatagcatggacagtatctaatggtgtttcagtagttatgttagtcacagcatggacagtatctaatggtgtttcagtaggtatgttagtcacagcatggggacagtatctaatggggtttcagtagttatgttagtcacagcatggggacagtatctaatggtgtttcagtagttatgttagtcatagcatggggacagtatctaatggtgtttcagtagttatgttagtcatagcatgaacagtatctaatggtgtttcagtagttatgttagtcacagcatggacagtatctaatggtgtttcagtagttatgttagtcatagcatggggacagtatctaatggtgtttcagtagttatgttagtcacagcatggggacagtatctaatggggtttcagtagttatgttagtcacagcatggacagtatctaatggtgtttcagtagttatgttagtcatagcatggacagtatctaatggggtttcagtagttatgttagtcacagcatggacagtatatgaaGAGGTTTACTATGCCAAACAAACATTTGGTATTCCACTACAGatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113829 lncRNA downstream 14806 92511792 ~ 92512213 (-) True G102022
TU113827 lncRNA downstream 19466 92507297 ~ 92507553 (-) True G102020
TU113823 lncRNA downstream 50751 92475943 ~ 92476268 (-) True G102016
TU113821 lncRNA downstream 53944 92472827 ~ 92473075 (-) True G102014
TU113819 lncRNA downstream 56739 92470059 ~ 92470280 (-) True G102012
TU113856 lncRNA upstream 1908 92533731 ~ 92541756 (-) True G102039
TU113857 lncRNA upstream 2232 92534055 ~ 92535114 (-) True G102040
TU113885 lncRNA upstream 42464 92574287 ~ 92627131 (-) True G102052
TU113891 lncRNA upstream 57633 92589456 ~ 92589987 (-) True G102058
TU113917 lncRNA upstream 104774 92636597 ~ 92636926 (-) True G102082
XM_036988702.1 mRNA downstream 694640 91793618 ~ 91832379 (-) False LOC110531398
XM_036988692.1 mRNA downstream 996572 91317168 ~ 91530447 (-) False LOC118966091
XM_036988676.1 mRNA downstream 996573 91317168 ~ 91530446 (-) False LOC118966091
XM_036990088.1 mRNA upstream 12066 92543889 ~ 92544887 (-) True LOC118966740
XM_036990094.1 mRNA upstream 85233 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 315641 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 317217 92849040 ~ 92850414 (-) False LOC118966095
XM_036988734.1 mRNA upstream 317329 92849152 ~ 92850414 (-) False LOC118966095
TU112492 other downstream 729574 91792579 ~ 91797445 (-) True LOC110531398
TU111909 other downstream 1293231 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 1541850 90982735 ~ 90985169 (-) True LOC110516041
TU111298 other downstream 1670453 90803445 ~ 90856566 (-) False G100197
TU113894 other upstream 59758 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 105475 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 207190 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 341746 92873569 ~ 92874498 (-) True G102158
TU113838 other upstream 364658 92896481 ~ 93019288 (-) False LOC110528622

Expression Profile