RNA id: TU113894



Basic Information


Item Value
RNA id TU113894
length 456
RNA type TUCP
GC content 0.55
exon number 2
gene id G102060
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 92591581 ~ 92595514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggcttcaacacagcgccccctatcagtcatctagtgtatagaTACGTAATTGGATCTGACCCTGCGTAGTTGGGTTGTTTCTACCAGAACGATTCCAATGGGCATTGGATGATGAATCACTGAGTAATGATGCATTGGGTTCTTAGCTGCTCTGCTATCATGAGCTACGTCTTTACAGAAATTCAACACAACATTAATGGAGAGAATTCTGATTGGCCAAACCAAACACACCTTGTTGGAATCTATCACTCAAACAGTCTCCACTGGacctggtgttggttacctggtccagtctacagtggtactggtgttggttaccaggtccagtctacagtggtactggtgttggttaccaggtccagtctacagtggtactggtgttggttaccaggtccagtctacagtggtactggtgttggttaccaggtccagtctacagtggtactagtgttggtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113891 lncRNA downstream 1594 92589456 ~ 92589987 (-) True G102058
TU113856 lncRNA downstream 49825 92533731 ~ 92541756 (-) True G102039
TU113857 lncRNA downstream 56467 92534055 ~ 92535114 (-) True G102040
TU113810 lncRNA downstream 59758 92527019 ~ 92531823 (-) False G102006
TU113811 lncRNA downstream 59758 92527019 ~ 92531823 (-) False G102006
TU113917 lncRNA upstream 41083 92636597 ~ 92636926 (-) True G102082
TU113925 lncRNA upstream 46553 92642067 ~ 92642966 (-) False G102087
TU113924 lncRNA upstream 46772 92642286 ~ 92642966 (-) True G102087
TU113933 lncRNA upstream 76601 92672115 ~ 92672379 (-) True G102095
TU113934 lncRNA upstream 77136 92672650 ~ 92672869 (-) True G102096
XM_036990088.1 mRNA downstream 46694 92543889 ~ 92544887 (-) True LOC118966740
XM_036988702.1 mRNA downstream 759202 91793618 ~ 91832379 (-) False LOC110531398
XM_036988692.1 mRNA downstream 1061134 91317168 ~ 91530447 (-) False LOC118966091
XM_036988676.1 mRNA downstream 1061135 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA downstream 1061135 91317168 ~ 91530446 (-) False LOC118966091
XM_036990094.1 mRNA upstream 21542 92617056 ~ 92622002 (-) True LOC118966741
XM_036990098.1 mRNA upstream 251950 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 253526 92849040 ~ 92850414 (-) False LOC118966095
XM_036988734.1 mRNA upstream 253638 92849152 ~ 92850414 (-) False LOC118966095
XM_036988727.1 mRNA upstream 253655 92849169 ~ 92850460 (-) True LOC118966095
TU112492 other downstream 794136 91792579 ~ 91797445 (-) True LOC110531398
TU111909 other downstream 1357793 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 1606412 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 1735015 90803445 ~ 90856566 (-) False G100197
TU113918 other upstream 41784 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 143499 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 278055 92873569 ~ 92874498 (-) True G102158
TU113838 other upstream 300967 92896481 ~ 93019288 (-) False LOC110528622
TU113839 other upstream 300967 92896481 ~ 92939885 (-) False LOC110528622

Expression Profile