RNA id: TU113918


Basic Information

Item Value
RNA id TU113918
length 1334
RNA type TUCP
GC content 0.47
exon number 2
gene id G102083
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 92637298 ~ 92638881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACTCTACCGTGCTCTACCGTGCTCTACCATACTCTACCGTACTCTACCGTACTCTgccatactctaccatactccACCATACTCTGCCATATTCCACCATACCctaccatactctaccatacagtaccataccctACCGTactctaccatacagtaccataccctaccataccctaccatactctaccataccctaccgtactctaccataccctaccatacagtaccataccctaccataccctaccgtactctaccatactctaccatactctaccatactctaccataccctaccatacagtaccataccctaccataccctaccataccctaccgtactctaccatactctgccATACTTCGCCGTACTCTACCATAccctaccatacagtaccataccctACCAGACTCTACCATACCctaccatactctaccataccctaccatactctaccataccctaccatactctaccatactctaccataccctaccataccccaccatactctaccataccctaccatactctaccatactctaccgtactctaccatactctgccgtactctaccatactctaccatactctgccatacagtaccatactctaccatactctaccatactctgccGTCCTCTACCATACCCTACCATACTCTACCGTACTCTGccgtactctaccatactctaccatactctgccgtactctaccatactctaccatactcttCCATGCAGTgccatactctaccatactctgccGTACTCTACCATACCCTACCATACTCTACCGTGCTCTGtcatactctaccatactctaccatactctaccaCACAGTACCGTgctctaccatactctaccataGTCTGCCGTACTCTACCAGACCCTACCATACTCTGCCATACTCTACCGTACTCTGCCATACTCTGccgtactctaccatactctaccatactctgccatacagtaccatactctaccgtactctaccatactctgccGTACTCTACCATACCCTGCCATACTCTACCGTACTCTGccgtactctaccatactctaccatactctgccgtactctaccatactctaccatactcttCCATacagtgccatgctctaccataCTCTGCCGTACTCTACCATACCCTACCATACTCTACCGTGCTCTGtcatactctaccatactctaccatactctaccaCACAGTACCGTgctctaccatactctaccataGTCTGCCGTACTCTGCCATACTCTACCGTACTCTACCATACTCCACCATACATTgccatactctaccatactctaccatactccACCATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113917 lncRNA downstream 372 92636597 ~ 92636926 (-) True G102082
TU113885 lncRNA downstream 10167 92574287 ~ 92627131 (-) True G102052
TU113891 lncRNA downstream 47311 92589456 ~ 92589987 (-) True G102058
TU113856 lncRNA downstream 95542 92533731 ~ 92541756 (-) True G102039
TU113857 lncRNA downstream 102184 92534055 ~ 92535114 (-) True G102040
TU113925 lncRNA upstream 3186 92642067 ~ 92642966 (-) False G102087
TU113924 lncRNA upstream 3405 92642286 ~ 92642966 (-) True G102087
TU113933 lncRNA upstream 33234 92672115 ~ 92672379 (-) True G102095
TU113934 lncRNA upstream 33769 92672650 ~ 92672869 (-) True G102096
TU113941 lncRNA upstream 42283 92681164 ~ 92686808 (-) True G102100
XM_036990094.1 mRNA downstream 15296 92617056 ~ 92622002 (-) True LOC118966741
XM_036990088.1 mRNA downstream 92411 92543889 ~ 92544887 (-) True LOC118966740
XM_036988702.1 mRNA downstream 804919 91793618 ~ 91832379 (-) False LOC110531398
XM_036988692.1 mRNA downstream 1106851 91317168 ~ 91530447 (-) False LOC118966091
XM_036988681.1 mRNA downstream 1106852 91317168 ~ 91530446 (-) False LOC118966091
XM_036990098.1 mRNA upstream 208583 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 210159 92849040 ~ 92850414 (-) False LOC118966095
XM_036988734.1 mRNA upstream 210271 92849152 ~ 92850414 (-) False LOC118966095
XM_036988727.1 mRNA upstream 210288 92849169 ~ 92850460 (-) True LOC118966095
XM_036988780.1 mRNA upstream 229721 92868602 ~ 92906174 (-) False LOC110528622
TU113894 other downstream 41784 92591581 ~ 92595514 (-) True G102060
TU112492 other downstream 839853 91792579 ~ 91797445 (-) True LOC110531398
TU111909 other downstream 1403510 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 1652129 90982735 ~ 90985169 (-) True LOC110516041
TU111298 other downstream 1780732 90803445 ~ 90856566 (-) False G100197
TU113974 other upstream 100132 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 234688 92873569 ~ 92874498 (-) True G102158
TU113838 other upstream 257600 92896481 ~ 93019288 (-) False LOC110528622
TU113839 other upstream 257600 92896481 ~ 92939885 (-) False LOC110528622
TU113840 other upstream 257600 92896481 ~ 92906045 (-) False LOC110528622

Expression Profile