RNA id: TU113941



Basic Information


Item Value
RNA id TU113941
length 385
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G102100
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 92681164 ~ 92686808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATCATGCAAACAAAAATTAAGTATTTAAAAAGCAGTTTTCCGccattatcacacgagaggaaggttatgttgaatatcattactgatcattatcacacgagaggaaggttatgttgaatatcattactgatcattatcacacgagaggaaggttatgttgaatatcattactgatcattatcacacgagaggaaggttatgttgaatatcattactgatcattatcacacgagaggaaggttatgttgaataccattaccgatcattatcacacgagaggaaggttatgttgaatatcattactgatcattatcacaggagaggaaggttatgttgaatatcattaccgatcattatcacatgagaggaaggttatgttgaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113934 lncRNA downstream 8295 92672650 ~ 92672869 (-) True G102096
TU113933 lncRNA downstream 8785 92672115 ~ 92672379 (-) True G102095
TU113925 lncRNA downstream 38198 92642067 ~ 92642966 (-) False G102087
TU113924 lncRNA downstream 38198 92642286 ~ 92642966 (-) True G102087
TU113917 lncRNA downstream 44238 92636597 ~ 92636926 (-) True G102082
TU113943 lncRNA upstream 1022 92687830 ~ 92688055 (-) True G102102
TU113962 lncRNA upstream 34501 92721309 ~ 92721519 (-) True G102111
TU113968 lncRNA upstream 44290 92731098 ~ 92731494 (-) True G102113
TU113972 lncRNA upstream 51063 92737871 ~ 92738217 (-) True G102117
TU113973 lncRNA upstream 51831 92738639 ~ 92738945 (-) True G102118
XM_036990094.1 mRNA downstream 59162 92617056 ~ 92622002 (-) True LOC118966741
XM_036990088.1 mRNA downstream 136277 92543889 ~ 92544887 (-) True LOC118966740
XM_036988702.1 mRNA downstream 848785 91793618 ~ 91832379 (-) False LOC110531398
XM_036988692.1 mRNA downstream 1150717 91317168 ~ 91530447 (-) False LOC118966091
XM_036988689.1 mRNA downstream 1150718 91317168 ~ 91530446 (-) False LOC118966091
XM_036990098.1 mRNA upstream 160656 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 162232 92849040 ~ 92850414 (-) False LOC118966095
XM_036988734.1 mRNA upstream 162344 92849152 ~ 92850414 (-) False LOC118966095
XM_036988727.1 mRNA upstream 162361 92849169 ~ 92850460 (-) True LOC118966095
XM_036988780.1 mRNA upstream 181794 92868602 ~ 92906174 (-) False LOC110528622
TU113918 other downstream 42283 92637298 ~ 92638881 (-) True G102083
TU113894 other downstream 85650 92591581 ~ 92595514 (-) True G102060
TU112492 other downstream 883719 91792579 ~ 91797445 (-) True LOC110531398
TU111909 other downstream 1447376 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 1695995 90982735 ~ 90985169 (-) True LOC110516041
TU113974 other upstream 52205 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 186761 92873569 ~ 92874498 (-) True G102158
TU113838 other upstream 209673 92896481 ~ 93019288 (-) False LOC110528622
TU113839 other upstream 209673 92896481 ~ 92939885 (-) False LOC110528622
TU113840 other upstream 209673 92896481 ~ 92906045 (-) False LOC110528622

Expression Profile