RNA id: TU113973



Basic Information


Item Value
RNA id TU113973
length 307
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G102118
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 92738639 ~ 92738945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatacagggggtactggtacagagtcaatgtggaggctatatacagggggtactggtacagagtcaatgtggagactatatacagggggtaccagtacagagtcaatgtggagactatatacagggggtaccagtacagagtcaatgtggagactatatacagggggtactggtacagagtcaatgtggaggctatatacagggggtactggtacagagtcaatgtggagactatatacagggggtactggtacagagtcaatgtggaggctatatacagggggtactggtacagagtcaatgtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113972 lncRNA downstream 422 92737871 ~ 92738217 (-) True G102117
TU113968 lncRNA downstream 7145 92731098 ~ 92731494 (-) True G102113
TU113962 lncRNA downstream 17120 92721309 ~ 92721519 (-) True G102111
TU113943 lncRNA downstream 50584 92687830 ~ 92688055 (-) True G102102
TU113941 lncRNA downstream 51831 92681164 ~ 92686808 (-) True G102100
TU113978 lncRNA upstream 11918 92750863 ~ 92751069 (-) True G102123
TU113982 lncRNA upstream 29177 92768122 ~ 92768915 (-) True G102126
TU113988 lncRNA upstream 49650 92788595 ~ 92788846 (-) True G102132
TU113989 lncRNA upstream 50096 92789041 ~ 92789364 (-) True G102133
TU113995 lncRNA upstream 61138 92800083 ~ 92800287 (-) True G102138
XM_036990094.1 mRNA downstream 116637 92617056 ~ 92622002 (-) True LOC118966741
XM_036990088.1 mRNA downstream 193752 92543889 ~ 92544887 (-) True LOC118966740
XM_036988702.1 mRNA downstream 906260 91793618 ~ 91832379 (-) False LOC110531398
XM_036988692.1 mRNA downstream 1208192 91317168 ~ 91530447 (-) False LOC118966091
XM_036988689.1 mRNA downstream 1208193 91317168 ~ 91530446 (-) False LOC118966091
XM_036990098.1 mRNA upstream 108519 92847464 ~ 92848944 (-) True LOC118966742
XM_036988731.1 mRNA upstream 110095 92849040 ~ 92850414 (-) False LOC118966095
XM_036988734.1 mRNA upstream 110207 92849152 ~ 92850414 (-) False LOC118966095
XM_036988727.1 mRNA upstream 110224 92849169 ~ 92850460 (-) True LOC118966095
XM_036988780.1 mRNA upstream 129657 92868602 ~ 92906174 (-) False LOC110528622
TU113918 other downstream 99758 92637298 ~ 92638881 (-) True G102083
TU113894 other downstream 143125 92591581 ~ 92595514 (-) True G102060
TU112492 other downstream 941194 91792579 ~ 91797445 (-) True LOC110531398
TU111909 other downstream 1504851 91232740 ~ 91233788 (-) True G100582
TU111641 other downstream 1753470 90982735 ~ 90985169 (-) True LOC110516041
TU113974 other upstream 68 92739013 ~ 92739530 (-) True G102119
TU114032 other upstream 134624 92873569 ~ 92874498 (-) True G102158
TU113838 other upstream 157536 92896481 ~ 93019288 (-) False LOC110528622
TU113839 other upstream 157536 92896481 ~ 92939885 (-) False LOC110528622
TU113840 other upstream 157536 92896481 ~ 92906045 (-) False LOC110528622

Expression Profile