RNA id: XM_036934878.1


Basic Information

Item Value
RNA id XM_036934878.1
length 1434
RNA type mRNA
GC content 0.49
exon number 10
gene id zgc:110410
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 714730 ~ 722393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATggtagtgcaccacatagggatCAGGGTGAATAGATGTCTGTTTGGGATGCAGCCCAACTGATTACAGGTAGACTTTGGCCCTGGAGGGACTGTTACAGGAAGAGACAGACCGGAGCGCTGTGGAAGAGGAGGGTAACATGGATCAATCGAAAAGAAGCAGTGAAGTCCAACTCCCACCGCCCTACTCTCAGGACGATGGTCAACAGAACACCTATGGCCAAGAGAACACCTATGGCCAAGAGAACACCTATGGCCAAGAGAACACCTATGGCCAACAGAACTACAGTTCTCCCCACTACGGTCTGAACGTTGGCCCTGGCAACATAGCGGTGGTCTCACCAGCGGGTCAGTATAACGACATGGGTCAGGGTCATCCCGAGGACCAACAACAACAATGGGCTGCTCCACTACCACCTGACTATTCCACCGGGCTGGAGGACACCGGCTGCTTTGATGACAAAGCCATAAGAAGAGGCTTTATAAAGAAGGTGTACCTGACTCTGATGATTCAGCTTCTAGTCACCTTTGGGATCATCTGTGCCTTTCTGTATTGGGAGGCTCTGAGGCTCTGGTCTATGAAGACCTACTGGTTTTCTTCCTGCATGATAGCAGTGGTGATTGTCATCATCATTTCCTTGTCCTGTTGTGCCAATATACGTCGGAAGGTCCCACTCAATTTCCTAGCCTTGGGACTGTTTACCACTGCAGAAGGTCTACTGCTGGGCTCTGTGACTGTGTTCTATGAGGCGGAAGCTGTTATGTGGGCTGTGGGCGCCACAGCACTGGTCTCCCTGGCTCTGAGTGTCTTCGCCATGCAGTCCAGATGGGACTTCACCTTAGCCAGTGGGGGCTTGTGGGTGTTCTGTTGGACACTCATATCCTTTGCATTGTTGTGTGGAATCATGCGATCCCAGTATGTGTACATTGTGTACGCTTGCCTGGGAACCTTGCTATTTTCTTTGtACCTGGTAATGGACACTCAGCTCATACTGGGCGGGAACCACAAATACAGCATTTCACCAGAGGAGTACATCTTTGCTGCTCTCAACCTGTACCTGGACATCATCTCTCTGTTCACCATGCTACTGGCACTCATTGGACTCAGCCGTTAACTTAATACGCTGTTGTCACGTCAGATAGCGCAACAAGCCACCTGCCCTGATGTAGTTGAGGGACGAGCGTGGAGTAGGAAATTAGGATAATGCCTTTTTAAAAatgaaatcaaatgaaatgtattggtcacatacacgtatttagcagatgttattgagggtgtagcgaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagccccaacagaaatgcttgtgttcctagctccaatataaatgcttgtgttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116881 lncRNA upstream 12379 699871 ~ 702351 (+) True G104102
TU116867 lncRNA upstream 24824 689586 ~ 689906 (+) True G104091
TU116485 lncRNA upstream 38355 676014 ~ 676375 (+) True G103840
TU116832 lncRNA upstream 71236 640776 ~ 643494 (+) True G104072
TU116818 lncRNA upstream 81391 632774 ~ 633339 (+) True G104067
TU116851 lncRNA downstream 3268 725661 ~ 731551 (+) True LOC118937316
TU116885 lncRNA downstream 18569 740962 ~ 741553 (+) False G104106
TU116886 lncRNA downstream 18569 740962 ~ 741553 (+) True G104106
TU116892 lncRNA downstream 24003 746396 ~ 748276 (+) True G104111
TU116895 lncRNA downstream 31306 753699 ~ 754328 (+) True G104114
XM_036934833.1 mRNA upstream 42536 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 696634 13864 ~ 18096 (+) True LOC118936272
XR_005034561.1 mRNA downstream 2398 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 138066 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 138066 860459 ~ 871976 (+) False cmc1
XR_005034563.1 mRNA downstream 138066 860459 ~ 872514 (+) False cmc1
XM_036934922.1 mRNA downstream 138408 860801 ~ 871977 (+) False cmc1
TU116869 other upstream 13459 690046 ~ 701271 (+) True G104092
TU116509 other upstream 533708 174996 ~ 181022 (+) True G103851
TU116937 other downstream 138113 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 138113 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 138113 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 430668 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 586885 1309278 ~ 1352863 (+) True tgfbr2b

Expression Profile