RNA id: XM_036934910.1


Basic Information

Item Value
RNA id XM_036934910.1
length 1091
RNA type mRNA
GC content 0.49
exon number 4
gene id cmc1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 860459 ~ 872515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGTGGAGAATTGTGGGCATTGTAGTTCGTTCCACAGTTGAGTGACGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGGTAATTTACTGGCTAAATCtgtctccttccatccatctggTTTCAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGCCATGATGAAAAATCACATTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116924 lncRNA upstream 80729 778189 ~ 779730 (+) True G104128
TU116903 lncRNA upstream 102688 756786 ~ 757771 (+) True G104116
TU116897 lncRNA upstream 102907 756786 ~ 757552 (+) False G104116
TU116941 lncRNA downstream 6083 878059 ~ 878664 (+) True G104138
TU116998 lncRNA downstream 14986 886962 ~ 896760 (+) False G104179
TU116999 lncRNA downstream 14986 886962 ~ 897406 (+) False G104179
TU116997 lncRNA downstream 22462 894438 ~ 896760 (+) False G104179
TU117000 lncRNA downstream 25075 897051 ~ 897406 (+) True G104179
XR_005034561.1 mRNA upstream 134484 724791 ~ 725975 (+) False LOC118937316
XM_036934878.1 mRNA upstream 138066 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA upstream 138066 714787 ~ 722393 (+) True zgc:110410
XM_036934833.1 mRNA upstream 188265 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 842363 13864 ~ 18096 (+) True LOC118936272
XM_036934970.1 mRNA downstream 33600 905576 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA downstream 33608 905584 ~ 908460 (+) False LOC110506977
XM_036934948.1 mRNA downstream 33618 905594 ~ 908576 (+) False LOC110506977
XM_021586864.2 mRNA downstream 33642 905618 ~ 908460 (+) True LOC110506977
XM_036934572.1 mRNA downstream 96640 968616 ~ 969528 (+) True LOC118936923
TU116869 other upstream 159188 690046 ~ 701271 (+) True G104092
TU116509 other upstream 679437 174996 ~ 181022 (+) True G103851
TU117843 other downstream 281085 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 437302 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 827097 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 836993 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1648740 2520716 ~ 2527972 (+) True G106019

Expression Profile