RNA id: TU116939


Basic Information

Item Value
RNA id TU116939
length 1437
RNA type TUCP
GC content 0.43
exon number 5
gene id cmc1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 860459 ~ 872515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCACCCGGAAGTAACGTGGTAAAGAAGAGAGGTCACTTTGCTtctgttttgtaatgttttgaTTTAGCAACACTGCTGATAATTATGGAAGCAACCAAAGCAGAGGAGCCTTTCCTGAGGCATGTGGAGACGGATGTACTCATCCCCAAGATGGTGAGGGAGAAAGCCAAGGAGCTCTGTGCTGAAAAGGTTACAGCGTTCAACCACTGTTGTAAAGAGACTGGCTTCCTGATGGTGTTCAAGTGTCGGGATCAGAACGCTGCCCTGAAGGAGTGTCTGACCGTACActacaGAGACTCTGCGTTATTCGAGGAGTGCAAGCAGGAGTACATCAAGGAGAAGCTGGAGTACCAGAGGACAGGGGTGGCGGCTAAGAACCGCTCACAAAAACTACCAACCAGCATGTAGGTTCCAaattgacccctgacccctgaccatGTTGCTTCCAcatgtccaatcctctcagatctacgGGATTGGTTCGGTAGCAGGGGCTAGGGGTCACGGAGGGTGGCAGGGGGAGTGAGGGCTACTCACGGGGCTTTACAGTGTGTGTATTGTACATCCGGTTGGGATGCTCATTGCCCCAACGGGAGGAACTAGATCAACGAAGTGGCAGGAGACAGGAGGTCATCCTAGGCCCTAAGTGACCTGTGTAACGACTACGAGGCAGATTGGCAAGGTGTGTCTAAAGGCCTCCGTTCACCTGTATGTAGGGAAAATAAATCTCTTACAGATACGTGTTCCTCAACAGAGTCTCTCTGGTTGATCTGATCTAACAGTCAGGATGAAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAATCACACTGTCCTCAACAGAGTCCCTCTGGTTGATCTGATCTAACAGCCATGATGGAAAAATCACACTGTTCCTCCTATTTCAGAATGATCcaataatgttttgttgttgatgctgtctgtctgctctgcagTTTGTATATTTATGAAGAATTTTTTCTGTCAATGCTTTGGAAACGTTTTCATGTTGAGTTTGTTAGCAACCAATACTGTCCAAAGTGAGATTGATTCCAATGATATAAGACCTGTCCAAAGTCCATGAATAATAGTCAAGGTGTTGACATCCCAACATCCTCCACTCTGAGAATGTTCCGGAAGGTTCATAATTATACACAAGATTGATACTGCATAGAGGCTTTATCCCGTAGTTAGGATTCACCGGTGGGTTGCCGTAACTACTGGTGTGATGACCGGTGAAGCATTATGGGTAGAGttgttgtaaaaaaaaaggtCTGATTTTTAATATAACATTTGACTTGACATTGTGTTAACGTACATATAAATAAAGACAAACAGATCTTCtagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116924 lncRNA upstream 80776 778189 ~ 779730 (+) True G104128
TU116903 lncRNA upstream 102735 756786 ~ 757771 (+) True G104116
TU116897 lncRNA upstream 102954 756786 ~ 757552 (+) False G104116
TU116941 lncRNA downstream 5544 878059 ~ 878664 (+) True G104138
TU116998 lncRNA downstream 14447 886962 ~ 896760 (+) False G104179
TU116999 lncRNA downstream 14447 886962 ~ 897406 (+) False G104179
TU116997 lncRNA downstream 21923 894438 ~ 896760 (+) False G104179
TU117000 lncRNA downstream 24536 897051 ~ 897406 (+) True G104179
XR_005034561.1 mRNA upstream 134531 724791 ~ 725975 (+) False LOC118937316
XM_036934878.1 mRNA upstream 138113 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA upstream 138113 714787 ~ 722393 (+) True zgc:110410
XM_036934833.1 mRNA upstream 188312 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 842410 13864 ~ 18096 (+) True LOC118936272
XM_036934970.1 mRNA downstream 33061 905576 ~ 908576 (+) False LOC110506977
XM_021586856.2 mRNA downstream 33069 905584 ~ 908460 (+) False LOC110506977
XM_036934948.1 mRNA downstream 33079 905594 ~ 908576 (+) False LOC110506977
XM_021586864.2 mRNA downstream 33103 905618 ~ 908460 (+) True LOC110506977
XM_036934572.1 mRNA downstream 96101 968616 ~ 969528 (+) True LOC118936923
TU116869 other upstream 159235 690046 ~ 701271 (+) True G104092
TU116509 other upstream 679484 174996 ~ 181022 (+) True G103851
TU117843 other downstream 280546 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 436763 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 826558 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 836454 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1648201 2520716 ~ 2527972 (+) True G106019

Expression Profile