RNA id: XM_021594101.2


Basic Information

Item Value
RNA id XM_021594101.2
length 2775
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC110515032
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1222130 ~ 1224904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttGGGACTGTATTTGAGTGGATTACTTTCCCTTTGTAAAGTGGAAGCTGTGGAGAGTAAAGTACAGAAGCTGTTACAGAACGAGGAGAGGCAGCGGTGTGAGATAATGGCATCCGGATCATCTCTACCAGAGGACAGGTTCTCCTGTCCCATCTGCTGTGACATCTTCAGGGATCCTGTCGTCCTGGCATGTGGCCACAGCTTCTGTGAAGTCTGTCAGCAGGAATACTGGGCAGATAAGAAACCTTGGAAATGTCCAGTTTGTAGGAGAAGATTTCCCGTAGCTATGACTCAACCTCCTCGTAACTTGGCGTTAAATGACGCGTGTGAGGCCTTCTTAcaggagagaaggcagagagctTCCGCTGGGTCTGAGATACAGGAcgggagtcagagagcttcatctggGTCTGAGATTCAGGAcgggagtcagagagcttcatctggCTCTGAGATACAGGACGgcagtcagagagcttcatctggGTCGGAGGTGCTCTGCAGTCTGCACGGTGAGAAATTCAAACTCTTCTGTCTGAAGGACAAACAGCCCGTCTGCTTGGTGTGTCGAGATTCAAAAGTACATAAATCTCACGACTGTGTCCCCGTAGACGAGGTTGTCCAGGACCTTAAGGAGGAACTCCACACCGCCCTGAAGCCTTTACAGAAGAACCTAGAGGTCTTTAACAACGTTAAACTAGCCTGTGATAAAACAGCAGAACACATGAAGAGTCAGGTCCAGCACACAGAGAAACAGATTAGGAAAGAGTTTGAGAAGCTTCACCAGTTTCTACGAGATGAAGAGGCAGCCAGGATAGCTGcactgagggaggaagaggagcagaaGAGTCAGATGATGAGGAAGAAGATTGAAGAGATGAGCAGAAAGATATCATACCTTTCAGATGCAATcagaaccatagaggaggagctGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAGGACCACAAAGGAAAGATCCCAGTACACACTGTTGGATCCACAGCTGGTCTCAGGAGTTCTGATAGACAAGGCCAAACACCTGGGCAACCTGCAGTTCAGAGTCTGGGAGAAGATACTGGGGATCCTCAAATACACTCCTGTGATTCTGGACCCAAACACTGCacatcccagtctctctctgactgatGATCTGACCAGTGTGAGAAGACCAGGCACGTCCCAGCAGTTCGTTAACAACCCAGAGCGATTCATGAGGTACACAAATGTTCTTGGCTCCGAGGGGTTCAGCTCAGGAATACACAGCTGGGAGCTGGAGGTGGGGGACCATCCTGACTGGGTTTTGGGCGTGGCTAAAGAGTCCATTGACAGGAAGCGGGAGCGTGATGCGACACCAAAGAATGGAATGTGGTGTATATCGCAGCACGGTGGGAAGTACATAGGGGGAGGAGGTGACATCATCGCTCTGAAGAGGAGACCCCAGAGGATCAGAGTGCAGCTGGACTACAACAGAGGGGAGGTGTACTTCTACGACCCCAAATACATGACACCTATCTACACTCTTAAAGTCAGATCTACTGAGAGACTGTTCCCATACTTTAATATTGGGAATGTGGCTAATGGCAACAACCCTGGTATTCAGATCTGCCAATCCAAAGTGTCTCTGAAAGTGAAgtaatccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaacatgTGTCAGTTCAGTGGACATTATCAGGAGGTCATTTTGGGGGTTAAGATAATACACACATAATTTTTACAAACTTCAGGACTGAAATATCCCTACGCTATGTACTTCCCTTTGAATTAAGGATCAATAAGAATACATTGTTTAAGAATCAATTAAAAATACATTCTATAAGAATAAATTAATAATACATTCTATAAGAATCAATTAATAATCAATTGTTTAAGAATCAATTAAGAATCAATTGTTTAAGAATCAATTAATAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTAAAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTCAAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTCAAATACATTCTATAAGAATCAATTAAGAATACATTGTTTAAGAATCAATTCAAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTAAGAATACATTCTATAAGAATCAATTATCAAGGGTGAATCATGGTTGTTATTCTTACAAGAGGAGTGTGCTGTATTGGGAAAATCTCCCCATAAGAAAAGTTAGTTGTTTCAAATGCAATGCATTTTGTTATGTGAAAAACTGTATATTTTTTCTGATTAAAAATAAACTTACTGTAAAACTGTCTAATCTCATGTGGTGACTACTTCGTGATCTGAATAAGAGTTCTGTCAGATCAGGCTGACCTTAGCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTAGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTAGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACCTGTCAGTAGTGTTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117865 lncRNA upstream 38412 1182336 ~ 1183718 (+) True G104776
TU117855 lncRNA upstream 48071 1173655 ~ 1174059 (+) True G104771
TU117854 lncRNA upstream 48602 1172408 ~ 1173528 (+) False G104770
TU117852 lncRNA upstream 48781 1172968 ~ 1173349 (+) True G104770
TU117835 lncRNA upstream 82156 1139191 ~ 1139974 (+) True G104756
TU117758 lncRNA downstream 8621 1233525 ~ 1234133 (+) True G104702
TU117880 lncRNA downstream 25317 1250221 ~ 1252467 (+) True G104789
TU117889 lncRNA downstream 41552 1266456 ~ 1267051 (+) False G104798
TU117890 lncRNA downstream 41746 1266650 ~ 1267051 (+) True G104798
TU118050 lncRNA downstream 47193 1272097 ~ 1272610 (+) True G104894
XM_036934572.1 mRNA upstream 252602 968616 ~ 969528 (+) True LOC118936923
XM_036934970.1 mRNA upstream 313554 905576 ~ 908576 (+) False LOC110506977
XM_036934986.1 mRNA downstream 84298 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034581.1 mRNA downstream 199412 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 199412 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 231432 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 249651 1474555 ~ 1564305 (+) True stt3b
TU117843 other upstream 68381 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 349615 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 349615 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 349615 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 520859 690046 ~ 701271 (+) True G104092
TU118057 other downstream 84374 1309278 ~ 1352863 (+) True tgfbr2b
TU118276 other downstream 474169 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 484065 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1295812 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1493057 2717961 ~ 2718525 (+) True G106122

Expression Profile