RNA id: TU118057



Basic Information


Item Value
RNA id TU118057
length 872
RNA type TUCP
GC content 0.50
exon number 5
gene id tgfbr2b
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1309202 ~ 1390936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTTCAGCAGTGAGTGTTCAGCTGAGCTGGAGAACGGTGTTTGGTGAAGGCAGTCTGCCTCTCGGAAAAGCGCGGCTCAAACTTTCAACGCTGCGATCTTGACTTCCACAAAGCTTTCTCTTTattaaacttgttttttttttattgaagcgGGATATATTTTAATGAACAACTGTGGTAAATATATTTACTGTCATGGAGCGACGTGGGTTTTCCTTACTGTGCTGGGGCACGATACCTTTCCTGTTTATATCCGTTCTGGAACCGAGCGGAGTCGATGGGATGTTCCAGCCGTCCTTCAGTCTCAACAAGTTGTGTAAGTTCTGTGACGTGGAGTCTTCATCCTGCAACGGAACAGGAAGCTGCCTCTCGAACTGCTCCATCACCTCCATCTGTCGTCTGGAGCATGAAGTCTGCATCGCCATCTGGAGGAAGAATGACAGTAACTACAGCATCGAGACTCTGTGTCATGACCCCTCCAAGCCTCTGTACGGCATCGAGCTGGATGACTACAACAGCTCTATGTGTACCATGAAAGAGAAGAAGAGCTCTGGAGGACCGTTGTACATTTGCTCCTGTACTGAGGAGGAGTGTAACGATAACCTGGCCTTCGCTCCCGtggtcGGCCCGACCATCGAGCCCCCGGTGGTATCTATCGTCCTGATCAGCCTGTTGCCCTTACTGGTCCTAGTGGTCGTAGTCATCACTATGTTCTATTGGTACCGAGTCCAACGCCATCGCAAACTCAGCCAGGAACAGTGGGACAGCAAGAAGCCCAAACGCAAGGGCAAAGGTCTGGACTGCAGCATCATGATGGACGACGATGGATCAGACAGCAGCTCAACGCACGCCAACAACCTCAACCACAACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118087 lncRNA upstream 1271 1307158 ~ 1308007 (+) True G104914
TU118086 lncRNA upstream 3735 1305244 ~ 1305543 (+) True G104913
TU118085 lncRNA upstream 5367 1303636 ~ 1303911 (+) True G104912
TU118084 lncRNA upstream 6227 1302428 ~ 1303051 (+) True G104911
TU118052 lncRNA upstream 33005 1276032 ~ 1276273 (+) True G104896
TU118109 lncRNA downstream 8597 1361460 ~ 1361840 (+) True G104925
TU118112 lncRNA downstream 17185 1370048 ~ 1370956 (+) True G104928
TU118121 lncRNA downstream 31055 1383918 ~ 1384319 (+) True G104937
TU118127 lncRNA downstream 39770 1392633 ~ 1397551 (+) True G104942
TU118132 lncRNA downstream 45378 1398241 ~ 1398624 (+) True G104944
XM_036934979.1 mRNA upstream 77743 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA upstream 84374 1222130 ~ 1224904 (+) True LOC110515032
XM_036934572.1 mRNA upstream 339750 968616 ~ 969528 (+) True LOC118936923
XM_036934970.1 mRNA upstream 400702 905576 ~ 908576 (+) False LOC110506977
XR_005034581.1 mRNA downstream 71453 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA downstream 71453 1424316 ~ 1426277 (+) False LOC118937323
XM_036935010.1 mRNA downstream 103473 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 121692 1474555 ~ 1564305 (+) True stt3b
XM_036935034.1 mRNA downstream 217447 1570310 ~ 1573421 (+) False LOC118937324
TU117843 other upstream 155529 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 436763 860506 ~ 872515 (+) False cmc1
TU116938 other upstream 436763 860506 ~ 872515 (+) False cmc1
TU116939 other upstream 436763 860506 ~ 872515 (+) True cmc1
TU116869 other upstream 608007 690046 ~ 701271 (+) True G104092
TU118276 other downstream 346210 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 356106 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1167853 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1365098 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1621960 2974823 ~ 3039475 (+) True G106240

Expression Profile