RNA id: TU118145


Basic Information

Item Value
RNA id TU118145
length 850
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC118937323
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1424316 ~ 1426453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAAATGCTATtggaacaaaacaaaaacaacgaGAGAAAACAGAATGTCTTGCCAGAATACGATATGAGGTATACTACAGAATGCACGTATCCTAGTATCGTACACAGAACTTCGTACAAGTTTAAAGTAAACACCATTCTCTTTGACGGCAAGCTACAAAAACAAAACACCTTCCTTTTAAAGCCAACGGGTAATAATGCATTATAAAGCAGCTGTAATGCATTAAGGTGTGACCATTTCTATCGTCTCATTATCGTCTCATAGTAATGACTAAATAACATTTTGAGTCCGTTTAAAACAAGAAAGGTGTCTCCACGTCTCTaactatcatcagactgttggaaCGGAGGAGGTGTCTCCTGATCTCTaactatcatcagactgttggaaCGGAGGAGGTGTCTCCTGATCTCTaactatcatcagactgttggaaCGGAGGAGGTGTCTCCTGATCTCTaactatcatcagactgttggaaCGGAGGAGGTGTCTCCTGATCTCTaactatcatcagactgttggaaCAGAGGAGGTGTCTCCTGATCTCTaactatcatcagactgttggaaCGGAGGAGGTGTCTCGTAGTAATGACTAAATAACATTTTGAATCCGTTTAAAACAAGAAAGAAAGCATTTCATCTGTTGGCTTTAAGTAAAgtattgggggaaaaaaacaactgtttattaaacataagaacgGTAGCCATTTTAAGACCTGTCTGATTTATGTAGGTGGACTCACAGTATTCAGGCACTAGGTGTGCtacgtttttttaaattgtttttttaataTGATTTTAAAATCGTAAAAGTTAATGCGTGTGGAAGAAAATTCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118136 lncRNA upstream 15645 1407391 ~ 1408774 (+) True G104948
TU118133 lncRNA upstream 21540 1401439 ~ 1402879 (+) True G104945
TU118132 lncRNA upstream 25795 1398241 ~ 1398624 (+) True G104944
TU118127 lncRNA upstream 26868 1392633 ~ 1397551 (+) True G104942
TU118121 lncRNA upstream 40100 1383918 ~ 1384319 (+) True G104937
TU118150 lncRNA downstream 18082 1444535 ~ 1445163 (+) True G104955
TU118155 lncRNA downstream 22268 1448721 ~ 1449440 (+) False G104959
TU118156 lncRNA downstream 22268 1448721 ~ 1449440 (+) True G104959
TU118160 lncRNA downstream 25735 1452188 ~ 1452833 (+) True G104963
TU118179 lncRNA downstream 32235 1458688 ~ 1459328 (+) True G104979
XM_036934986.1 mRNA upstream 33483 1309202 ~ 1390936 (+) False tgfbr2b
XM_036934979.1 mRNA upstream 192884 1023461 ~ 1231535 (+) True rbms3
XM_021594101.2 mRNA upstream 199515 1222130 ~ 1224904 (+) True LOC110515032
XM_036934572.1 mRNA upstream 454891 968616 ~ 969528 (+) True LOC118936923
XM_021586864.2 mRNA upstream 515959 905618 ~ 908460 (+) True LOC110506977
XM_036935010.1 mRNA downstream 29883 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA downstream 48102 1474555 ~ 1564305 (+) True stt3b
XM_036935034.1 mRNA downstream 143857 1570310 ~ 1573421 (+) False LOC118937324
XM_036935045.1 mRNA downstream 144098 1570551 ~ 1573421 (+) False LOC118937324
XM_036935038.1 mRNA downstream 144128 1570581 ~ 1573421 (+) False LOC118937324
TU118057 other upstream 71556 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 270670 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 551904 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 272620 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 282516 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 1094263 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1291508 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1548370 2974823 ~ 3039475 (+) True G106240

Expression Profile