RNA id: XM_036935016.1


Basic Information

Item Value
RNA id XM_036935016.1
length 2492
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110515934
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1427251 ~ 1457133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCAAAACGACACAAACAAAAACGCACTGACGCAGTGAAACCGTGGCCCCGCGGCAACAGTGCAGAGAGAAAATAATTGGTCAACTTGATTCTTCTAGACTCTTGACTGTAATCAGCCAGTGTTCTTCCATGACGCCCAGGCAACCCGCCAGTAACAAGGATGGCCTAACCTTGCCCACGGGGCGCGACGTCACCATGTTAAAGACATTCTTGGTCTATAAAGGAGACATTCTAGTTTATCTCCAAacattatttaaaacattttagctGGAAGAACAGAGCTGTTTGAGACCAATCAATTCAACCATAAATGAACAATGGCGCCGACGAATGAAAGACATATGAACGATACCTCTAGTAAGGCCTCAGCGAGCCCCGCGGAGCCCAAGGGGAAGCGGCCCCCAGTGCTTGTGGACGGGGTGACTCTGAACGGCCCCACGCTGGACATCAGGGAAGCAGAGAGCTTCCTCAGAGACGCCATGCCCATCATCATGGAGGAGGCCGTCTGGAAGGCTACTGACGTCAAGGAGAAGGTGTGTGAGTGGCGCTCTCCGGAGCAGCTGAAGGACCTATTAGACCTAGAGCTGAGGGAAGGAGGCGAGGCACATCCCCAGATACTGCAGCGCTGTCGGGATGCCATCCGATACAGTGTCAAGACCGGACATCCTCTCTTCTTCAACCAGCTCTATGCAGGCATGGACCCTTATTCACTAGTGGGCCGATTCATCACAGAAGCTATCAACCCCAGTCTGTACACGTACGAGGTGGCTCCAGTGTTCCTGCTGACAGAGGAGGCGGTTCTGCAGAAGATGATTGAGATCATTGGATGGCAGGAGGGAGGGGACGGCATCTTCAGCCCAGGTGGCTCTGTGTCCAACATGTATGCTGTGAACGTGGCCAGGTACCACCACTGTCCTGATGTGAAGGTGCTGGGCCTGTCTGCCTTGCCTAGACTGGTCATGTTTACATCTCAGgagTGTCATTACTCGGTTGCCAAAGCAGCGGCTTTCCTAGGAATTGGCACCAACAATGTTTATGTGATCCCGTCAGATAAGAGAGGGAAGATGATTCCTGCGGAGTTTGAGAAGCAAGTACAGAGAGCCAAAGATGAGggagCGTTGCCCTTCATGGTGAACGCCACAGCAGGGACCACCGTTCTAGGGGCCTTCGACCCGCTGGAGGAGATAGCTGACATCTGTGAACGACACAATCTATGGATGCATGTAGATGCATGTTGGGGAGGAGGAGCCCTGATGTCTAAGAAACACAGATACCTGCTGCAGGGCATTCACAGAGCCAACTCAGTAGCATGGAATCCTCACAAGATGCTGATGGCTGGTCTACAGTGCTGTGCATTCATGGTTCGGGACAAAACGAATCTTCTCCAGCGGTGTCACTCGGCCCAGGCCTCCTACCTCTTCCAGCAGGATAAGTTCTATGACGTCAGCTATGACACGGGAGACAAGTCCATTCAGTGCAGCCGCAAGCCCGACGCCTTCAAGTTCTGGCTGATGTGGAAAGCCATCGGCACCAAGGGTCTGGAAGAGAGAGTGGACAGAGCCCTCGCTATGGCCAGATATCTGGCAGAGGAGATCAAGAAGAGAGATGGATTCCGTCTTGTGATGGAGCCGGAGTACACCAACGTCTGTTTCTGGTACATTCCTCCCAGTCTGAGGGACATGGCTGACGGACCCGAGTTCTGGAGAAATGTCCATGCGGTGGCGCCAGTGGTTAAGGAGCGCATGATGAAGAAGGGCTCTATGATGGTAGGCTACCAGCCCCATGGAGACAAGGCTAACTTCTTCAGACAGATCATCATTAGCCCTCAGGTCAGCAGAGAAGACATGGACTTTCTGCTGGACCAAATACACAGCCTGGGGATGGACTTATGATCCCACGGGGGAATACctacaaaatggcaccctaattccctcaatgagtcctggtcaaaagtagtgcaatatatacaGGGAATTTGGGTACCATTTTGAACAAAACCCAAATGGCCATGTTCAGTAGGCAAGAAACAGGAGATCCTGTTTTGAAACTGAGTGAAACGGAAGAGGTGGTACCCCAAACATCCTATAAGACGTTTCCAAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAAACATCCTATAAGAAGTTTCCAAACGTCCTATAAGAAGTTTCCAAACGTCCTATA

Function

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118583 lncRNA downstream 24611 1398473 ~ 1402640 (-) True G105244
TU118525 lncRNA downstream 36322 1377083 ~ 1390929 (-) False G105205
TU118530 lncRNA downstream 36322 1389346 ~ 1390929 (-) True G105205
TU118527 lncRNA downstream 36426 1389346 ~ 1390825 (-) False G105205
TU118566 lncRNA downstream 50810 1363753 ~ 1376441 (-) False G105230
TU118617 lncRNA upstream 15728 1472861 ~ 1474067 (-) True G105271
TU118680 lncRNA upstream 30164 1487297 ~ 1490169 (-) False G105294
TU118681 lncRNA upstream 30164 1487297 ~ 1489612 (-) True G105294
TU118687 lncRNA upstream 45182 1502315 ~ 1502980 (-) True G105299
TU118689 lncRNA upstream 47935 1505068 ~ 1505682 (-) False G105301
XR_005034578.1 mRNA downstream 111006 1315664 ~ 1316245 (-) False LOC118937319
XR_005034579.1 mRNA downstream 111171 1315664 ~ 1316080 (-) False LOC118937319
XM_036934934.1 mRNA downstream 521833 879818 ~ 905418 (-) True azi2
XM_036934936.1 mRNA downstream 521836 879818 ~ 905415 (-) False azi2
NM_001281390.1 mRNA downstream 614061 806150 ~ 813190 (-) True eomesb
XM_036935030.1 mRNA upstream 116269 1573402 ~ 1683489 (-) False LOC110515405
XM_021593425.2 mRNA upstream 245818 1702951 ~ 1704863 (-) True kiaa1143
XM_036935120.1 mRNA upstream 252383 1709516 ~ 1731976 (-) False zdhhc3a
XM_036935112.1 mRNA upstream 252383 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935117.1 mRNA upstream 252383 1709516 ~ 1732333 (-) False zdhhc3a
TU118548 other downstream 84916 1333986 ~ 1342335 (-) False G105220
TU118668 other upstream 83597 1540730 ~ 1541706 (-) True G105285
TU118629 other upstream 136648 1593781 ~ 1619036 (-) False LOC110515405
TU118763 other upstream 184134 1641267 ~ 1641732 (-) True G105340
TU118889 other upstream 455459 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 455459 1912592 ~ 1916995 (-) False G105427

Expression Profile