RNA id: XM_036935000.1


Basic Information

Item Value
RNA id XM_036935000.1
length 2782
RNA type mRNA
GC content 0.54
exon number 16
gene id stt3b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1456336 ~ 1564305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCTCTCTTCCTGGTCCTGCTGTCCACGGTGCGCCCGCCCTGACATCAACTTCCAAGGAGGAGCAGCTCGTCGGTTCGCGTGCGCTACTGCGGTACTGCAACCCCGGCTGCTATGTGACTCCATCGGGGGAACTTGTTTTGAATTAGCGGTCCGGTTATACCCAGGATAGGGTTCTGGTGATTGGAAGTGAAACGAGAGGTGCAGATAGGGTGTGAGGGTCTTCGACAGTGGAGCGTGGCAGCAGGAGGGGGATTTCTCTCGTTCCTATCAGATCTGCCTACAACCGGGGTCTGGCGTAGAATATGGCGGAACATCACTCTGTTTCCGATAGCAAGCATAAAGCTTCTGCTGTGAATATCGGAGCTTCTCTCTCTGGGAATGGACGGAGCAGTCCAGCGGGGACCGTCGGTAGTAGTCCTACGGGGGCTCTCTCCACCGGGATAGCTCAGCCGGCAGGGTGGCAGTCCTTACTTTCGTTTACCATCCTGTTTCTGGCCTGGCTTGCTGGTTTCAGTGCCAGGCTCTTCGCTGTCATCCGATTTGAGAGCATCATCCACGAGTTTGACCCTTGGTTCAACTACAGATCTACTCACCATCTGACCATCAACGGCTTCTACGACTTCCTCAACTGGTTCGATGACAGGGCCTGGTACCCACTGGGAAGGATAGTGGGTGGCACGgtttaccCAGGTCTGATGGTAACAGCTGGTCTCATCCACTATGTTCTAAACCTGCTCCACATCACGGTGCACatcagagacgtgtgtgtgttccTGGCGCCCGTCTTCAGCGGCCTCACGTCCATCTCCACCTTCCTGCTGACCCGCGAGCTCTGGAACCAGGGGGCGGGGCTTCTGGCGGCGTGCTTCATCGCTATTGTCCCTGGTTACATCTCCCGCTCCGTGGCGGGCTCCTTCGACAATGAGGGCATCGCCATCTTTGCCCTCCAGTTTACCTACTATCTATGGGTGAAATCAGTGAAGACTGGGTCAGTGTTCTGGGCCATAGGCTGCTGCCTCTCATACTTCTACATGgtgtcTGCATGGGGAGGCTACGTCTTCATCATCAACCTGATCCCTCTCCATGTGTTTGTCCTGCTGCTAATGCAGCGATACAGCAGACGAGTCTACATCGCTTACAGTACGTTCTACATCGTTGGTCTGGTGCTCTCCATGCAGATCCCCTTTGTGGGGTTCCAGCCAATCAGGACCAGCGAACACATGGCTGCAGCAGgTGTGTTTGCGTTGCTCCAGGCCTATGCATTCCTCCAGTACCTGAAAGACAGACTGACCAGACAGGAGTTCCAGACCCTGTTCTTCCTGGGGGTCTCTCTGGCTGCTGGGGCAGTCTTCCTCACTGTTATATACCTGACttatacagGACACATCGCTCCTTGGAGTGGTCGATTCTATTCACTGTGGGATACAGGgtaTGCTAAGATCCACATCCCCATCATAGCGTCTGTGTCGGAGCACCAGCCCACCACATGGGTCTCGTTCTTCTTCGACCTCCACATCCTGGTCTGTACCTTTCCTGCTGGACTCTGGTTCTGCATCAAGAACATCAACGACGAGAGAGTCTtcgtGGCGCTGTATGCCATCAGTGCTGTCTACTTTGCTGGAGTGATGGTCCGTCTGATGCTGACCCTGACCCCTGTAGTGTGTATGCTGTCAGCTATAGCCTTCTCCAGCGTGTTTGAACACTACTTAGGGGACGACATGAAGAGGGAGAGCCCTCCCATAGAGGACAGTAGTGATGAGGACGACAAGAGGAACTCTGGAAACCTCTATGATAAGGCAGGGAAGGTCCGTAAGCACGTCTCAGAGCAGGAGAAGACAGAGGAAGGTCTGGGGCCCAACATTAAGAGTATCGTCACCATGTTGATGTTGATGCTGCTCATGATGTTCGCTGTCCACTGCACCTGGGTTACTAGTAACGCCTACTCCAGCCCTAGTGTTGTACTGGCCTCTTATAACAACGATGGGTCGAGGAATATTCTAGATGATTTCCGCGAGGCCTACTATTGGCTAAGGCAGAACACAGAGGAGCAGGCCAGAGTGATGTCGTGGTGGGACTATGGCTATCAGATAGCAGGGATGGCCAATCGGACCACGCTAGTGGACAACAACACCTGGAACAACAGTCATATAGCACTGgTGGGGAAGGCCATGTCGTCCAATGAGAGTGCAGCGTATGAGATCATGAGGTCTTTGGACGTGGACTATGTGCTTATTATCTTCGGTGGCGTGATTGGCTACTCTGGTGATGACATCAACAAGTTCCTGTGGATGGTGCGGATCGCAGAGGGAGAGCATCCTAAAGAGATCAGGGAGAGTGACTACTTCACCCCCCAGGGAGAGTTTAGGGTGGACAAAGCGGGGTCTCCCATCCTGCTCAACTGTCTGATGTATAAGATGTCGTACTACCGCTTTGGAGAGATGCAGCTGGACTTCCGGACGCCGCCGGGTTTCGACCGGACCCGTAACACTGAGATCGGTAACAAGGACATCAAGCTGAAACACCTGGAGGAGGCGTTCACCTCAGAACACTGGCTGGTCCGGATCTACAAGGTCAAGAAGGAGGAGAACAGGGACCCCCTGGTGCACAGCCcccgcagcagcagcagcagacaaAAGTACACCTCTAAAAAGACGGCGAAGAGGAAGCGTGGTCATGTGAAGAACAAACTTGCCCTCAAGAAAGGCAAGAAACTGAACAACAAGAAATCAGTTTAGCCATAAAAACGACCACAAAGGcgctacgagagagagagagtgag

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0004576 oligosaccharyl transferase activity molecular_function

KEGG:

id description
K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118182 lncRNA upstream 11218 1460537 ~ 1463337 (+) True G104981
TU118179 lncRNA upstream 15227 1458688 ~ 1459328 (+) True G104979
TU118160 lncRNA upstream 21722 1452188 ~ 1452833 (+) True G104963
TU118155 lncRNA upstream 25115 1448721 ~ 1449440 (+) False G104959
TU118156 lncRNA upstream 25115 1448721 ~ 1449440 (+) True G104959
TU118227 lncRNA downstream 21352 1585657 ~ 1588473 (+) True LOC118937327
TU118229 lncRNA downstream 25290 1589595 ~ 1591453 (+) True G105014
TU118238 lncRNA downstream 33281 1597586 ~ 1597987 (+) True G105019
TU118240 lncRNA downstream 33880 1598185 ~ 1599210 (+) False G105020
TU118241 lncRNA downstream 34416 1598721 ~ 1599541 (+) False G105020
XR_005034581.1 mRNA upstream 48278 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA upstream 48278 1424316 ~ 1426277 (+) False LOC118937323
XM_036934986.1 mRNA upstream 83619 1309202 ~ 1390936 (+) False tgfbr2b
XM_036934979.1 mRNA upstream 243020 1023461 ~ 1231535 (+) True rbms3
XM_036935034.1 mRNA downstream 6005 1570310 ~ 1573421 (+) False LOC118937324
XM_036935045.1 mRNA downstream 6246 1570551 ~ 1573421 (+) False LOC118937324
XM_036935038.1 mRNA downstream 6276 1570581 ~ 1573421 (+) False LOC118937324
XM_036935050.1 mRNA downstream 6276 1570581 ~ 1573421 (+) True LOC118937324
XR_005034596.1 mRNA downstream 23877 1588182 ~ 1588650 (+) False LOC118937327
TU118057 other upstream 121692 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 320806 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 602040 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 134768 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 144664 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 956411 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1153656 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1410518 2974823 ~ 3039475 (+) True G106240

Expression Profile