RNA id: XM_036935045.1


Basic Information

Item Value
RNA id XM_036935045.1
length 2483
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC118937324
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1570310 ~ 1573421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATAAATTAGACTCTATAAATATCTCTTCAAGGTTCTGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATTTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTTGGTCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCATGGTTCGGCCATAAATTAGACTCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCTTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCATATAAAGATCTCTTCAAGGTTCGGCCCTATAAAGATCTCTTCAAGGTTCGGCCATATAAAAGGACAAACAGACTGGAGCACCGGGCTACTTCCTGGTTCCAATCATTCCAACGTTAGTGTGTGAATACTGAAGATTGCTGGTGTGGGTTGAAGAAATGGCTTTGACTTTGACATTGTAGCAGTGTTCACCTCTGAAGGGGCTGGAGGAAACGCTGTTCTCTATACTGGGCCATTGTGTTATGAACAGTGTCCAAGTCAAGTGTGACAAACATACATAACcggtatgtatatactgtacatcatagAACAGAAGGGCTGAAGGAAGACTCTTCACTAAACAGTGTGTTTGGTGTTGAGTGTTAATTATGGACAAATCATTAGATCCTTGGATCTTACATACATCATACAGCTGGAAGGAAATTCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAAGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAATCACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGgtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACTGGCTAATAACAGTGGAGACAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTGGAAGGACAACCCCTCCTGTGGCCTACtgggtaataacagtggagacAGCTACAGTACCTGTACAAACCAATTAAAAGTGAAGGAAGAAGCATGTGAATATAACATATTCTTCTGGTATTTAGATTCTACTGTCTATAAAAAAAAAGCTACATAATTGTTCAGCTATCTTTGACCACCAACGATCACGCTCATCTTCCGTCCCTAACCAACATCTTCCTGGTTCGACCCGGTCCGTCTCCAAAATGGCCGCCGAGTTTCCTGTATCGTGTGGTAGCAGGTCAGCTTCTGACAGGACACTCAGTGAGCTTTTTTGCTGTCTTGACTGTAGTTCCTGTCCCTCTGAGAGTCTTTGGCACCTCTCATTCTTATTGAATGACTGAGACACAAGCTCCTCATTCAAGACAATCCGTTGGGCAAATCTGAaattagcaccctattccctatgtagtgcactcttTCTGCAGTTGTccgctatatagagaatagggttccatttggaacacaggccCCTTGTGTATTTCCTCTGTTCTCTAGCGGCCCGGCTAGCTGGTCCCCTGTGTGTTGCCATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118215 lncRNA upstream 30341 1538977 ~ 1540210 (+) False G105001
TU118214 lncRNA upstream 30341 1539605 ~ 1540210 (+) True G105001
TU118208 lncRNA upstream 55510 1514533 ~ 1515041 (+) True G104999
TU118204 lncRNA upstream 56306 1512292 ~ 1514245 (+) False G104997
TU118227 lncRNA downstream 12236 1585657 ~ 1588473 (+) True LOC118937327
TU118229 lncRNA downstream 16174 1589595 ~ 1591453 (+) True G105014
TU118238 lncRNA downstream 24165 1597586 ~ 1597987 (+) True G105019
TU118240 lncRNA downstream 24764 1598185 ~ 1599210 (+) False G105020
TU118241 lncRNA downstream 25300 1598721 ~ 1599541 (+) False G105020
XM_036935010.1 mRNA upstream 6246 1456336 ~ 1564305 (+) False stt3b
XM_036935000.1 mRNA upstream 6246 1474555 ~ 1564305 (+) True stt3b
XR_005034581.1 mRNA upstream 144274 1424316 ~ 1426277 (+) False LOC118937323
XR_005034582.1 mRNA upstream 144274 1424316 ~ 1426277 (+) False LOC118937323
XM_036934986.1 mRNA upstream 179615 1309202 ~ 1390936 (+) False tgfbr2b
XR_005034596.1 mRNA downstream 14761 1588182 ~ 1588650 (+) False LOC118937327
XR_005034597.1 mRNA downstream 15399 1588820 ~ 1589368 (+) True LOC118937328
XR_005034594.1 mRNA downstream 31719 1605140 ~ 1606773 (+) False LOC118937325
XR_005034589.1 mRNA downstream 31918 1605339 ~ 1606773 (+) False LOC118937325
XR_005034590.1 mRNA downstream 31918 1605339 ~ 1606773 (+) False LOC118937325
TU118057 other upstream 217688 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 416802 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 698036 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 125652 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 135548 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 947295 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1144540 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1401402 2974823 ~ 3039475 (+) True G106240

Expression Profile