RNA id: XR_005034589.1


Basic Information

Item Value
RNA id XR_005034589.1
length 805
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC118937325
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1605140 ~ 1606773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAGGTGATGAAGCTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGCTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGCTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGCTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGCTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTCATGAAGCTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGGGGTCTAGGTGATGAAGTTATAATCACTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118241 lncRNA upstream 5798 1598721 ~ 1599541 (+) False G105020
TU118242 lncRNA upstream 5798 1598853 ~ 1599541 (+) True G105020
TU118240 lncRNA upstream 6129 1598185 ~ 1599210 (+) False G105020
TU118238 lncRNA upstream 7352 1597586 ~ 1597987 (+) True G105019
TU118229 lncRNA upstream 13886 1589595 ~ 1591453 (+) True G105014
TU118294 lncRNA downstream 26964 1633737 ~ 1634417 (+) True G105049
TU118300 lncRNA downstream 34049 1640822 ~ 1641037 (+) True G105052
TU118306 lncRNA downstream 42184 1648957 ~ 1649297 (+) True G105058
TU118309 lncRNA downstream 42834 1649607 ~ 1650827 (+) True G105060
TU118312 lncRNA downstream 54815 1661588 ~ 1662075 (+) False G105063
XR_005034597.1 mRNA upstream 15971 1588820 ~ 1589368 (+) True LOC118937328
XR_005034596.1 mRNA upstream 16689 1588182 ~ 1588650 (+) False LOC118937327
XM_036935045.1 mRNA upstream 31918 1570551 ~ 1573421 (+) False LOC118937324
XM_036935053.1 mRNA downstream 76788 1683561 ~ 1698369 (+) True gpd1l
XM_021594953.2 mRNA downstream 98116 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA downstream 98116 1704889 ~ 1707675 (+) True tmem42a
XM_036935139.1 mRNA downstream 138525 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA downstream 138525 1745298 ~ 1794938 (+) True LOC110514512
TU118057 other upstream 252476 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 451590 1153061 ~ 1153749 (+) True G104761
TU116937 other upstream 732824 860506 ~ 872515 (+) False cmc1
TU118276 other downstream 92300 1699073 ~ 1700431 (+) True G105036
TU118283 other downstream 102196 1708969 ~ 1710557 (+) True G105042
TU119728 other downstream 913943 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 1111188 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1368050 2974823 ~ 3039475 (+) True G106240

Expression Profile