RNA id: XM_021593425.2


Basic Information

Item Value
RNA id XM_021593425.2
length 1334
RNA type mRNA
GC content 0.42
exon number 3
gene id kiaa1143
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1702951 ~ 1704863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTTCAGCGGGCGCAGGGTGATGACGATTCAATGTGACGATAAACACGACGGGCTAAACACAACCTGAAATTATCTTCGTTTCCTTAATTTGTTCTAACTCTCAAAATGGCTAAGACGAATAAGGGTCCGAAAGCGAACGTATCGTGGGTGAAACCAGCAGAACCGTCATTTTTAAAGAAATTCAAGAACGATGTTGGCTTTAAGGAAGGACCCACCATTCATACCAAGCGTTTAGAGATACCAGCCTTGGAGGATGACAGTGGCAGTGATCGTGAAGATGAGCTGCCTCAAGTTGTCATTCTCAAAAAGGGAGATTTGAGCGCTGAAGAAGTGTTACAGATAAAAGAGGTAAAGGATGGTACAGATAAAGAAGACAAGCCTCCTGCGGACGGAAAGATCCTGTTCAAGAAGCCCACGAAGCGCTCCTCCGACAAGTTCCAGGGCATCACCGCCAGCTctaacaacaacaagaagaagaagagtgaaggaaagagtgaaggaggagatgaagagaaaAAGGAGAAGTCTGAAAAGAAGGTGAAGAACAAGAGTCTTCTCTCTTTCggagaggatgaggatgaggactAGAAGTGAATTCACCGCAGGGATATCAGACTAGAGCAATCAACCGCTCATGGATGATGGAACTGATCTACTGCGGTTGTTGGTTTTTACTATGGGCAAAAAAAACCAACATAGAATAGCTCCACATCGTAGTTTGTCCCACTAGACTAAGATCCTTAGACATTACGGGTCATCCCCTCTTTTTTGGAGGTGGAATCTGGACATGTATGTGAAACAAACCCCTTCAATCTCATTCACGATCAAAGATCTTTTAGATTACATAAGATGCATGCTGTTATTCTTTGTCGACTATAAGACATGTCTCTGCTGTTTGAAATGTTGTATAGTGACTCACCGTGGGCCTATTATCCATCCATTACAACTGTAGTCATCCGTCCTTCAGTGGATCCTCTGCACTTTTTCATACAGCCAACACACAGTCTGGATCGAAGATTTTATCAAGGTGACAACAGCTACTAAATGGGGGAAGCAATGAGCTGGTGGcttttggtttaaaaaaaaatatatatagtctgGAGCGTTGTGATGTGATACTTTTCTACAGTCAATAATTCATTGGATGTACAAATATGTTTTAGCTTCGACAACGGAGCAGCAAAAGATGTCTTTAGTTAAACCACTGCGTTGGTTTGATGCCGAGGTGTTGGATTTTTCTGTGattgtattgtgtgtttttttgttatgATGATGTTTAGTTGAATAAGTTTGAAATGTAACTATTAAAATACATCAAGGCCTTACGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118814 lncRNA downstream 481 1701371 ~ 1702470 (-) True G105385
TU118810 lncRNA downstream 9551 1689966 ~ 1693400 (-) True G105381
TU118665 lncRNA downstream 19925 1682769 ~ 1683026 (-) True LOC110515405
TU118804 lncRNA downstream 23035 1679618 ~ 1679916 (-) True G105376
TU118796 lncRNA downstream 24903 1668015 ~ 1678048 (-) True G105368
TU118815 lncRNA upstream 2700 1707563 ~ 1707903 (-) True G105386
TU118823 lncRNA upstream 31839 1736702 ~ 1736975 (-) True G105394
TU118832 lncRNA upstream 51540 1756403 ~ 1756941 (-) True G105402
TU118838 lncRNA upstream 57452 1762315 ~ 1763503 (-) False G105406
TU118840 lncRNA upstream 57452 1762315 ~ 1764283 (-) False G105406
XM_036935030.1 mRNA downstream 19462 1573402 ~ 1683489 (-) False LOC110515405
XM_036935016.1 mRNA downstream 245818 1427251 ~ 1457133 (-) True LOC110515934
XR_005034578.1 mRNA downstream 386706 1315664 ~ 1316245 (-) False LOC118937319
XR_005034579.1 mRNA downstream 386871 1315664 ~ 1316080 (-) False LOC118937319
XM_036934934.1 mRNA downstream 797533 879818 ~ 905418 (-) True azi2
XM_036935120.1 mRNA upstream 4653 1709516 ~ 1731976 (-) False zdhhc3a
XM_036935112.1 mRNA upstream 4653 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935117.1 mRNA upstream 4653 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA upstream 4653 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935130.1 mRNA upstream 4653 1709516 ~ 1732333 (-) False zdhhc3a
TU118763 other downstream 61219 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 83915 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 161245 1540730 ~ 1541706 (-) True G105285
TU118548 other downstream 360616 1333986 ~ 1342335 (-) False G105220
TU118889 other upstream 207729 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 207729 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 207809 1912672 ~ 1916995 (-) False G105427
TU118896 other upstream 207809 1912672 ~ 1916995 (-) False G105427
TU118901 other upstream 207809 1912672 ~ 1916995 (-) False G105427

Expression Profile