RNA id: XM_036935120.1


Basic Information

Item Value
RNA id XM_036935120.1
length 1315
RNA type mRNA
GC content 0.54
exon number 9
gene id zdhhc3a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1709516 ~ 1732333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGACTCTCCGCCtcgatggaagagagagaggacggtGTTGACAGTTCCTCCGCTGTGGATTCACCAGGAGTCATTTCATGCCTATTTTCATGCGGTGACTGTGAGGCGGGCCCCATCCTGAGTCTGTACGATGAAGAGCCCGGTGCACAGgtgCAGGGACGTGGAGAGGCAGGCTGCCTGCCTGCAGACTGAGCAGCCGTGTGTCCCCGTCTCCCAGCACATCCCCAGCGGCATGTGGTTTATCAGGGACGCGTGTGGCATCGTGTGCGGGGTTATCACCTGGATGCTGGTGTTCTATGCTGAGTTTGTCGTGCTCTTCGTCATGCTGTTGCCTTCTAAAAACCTGACCTATAGCTTAGTCAACGGGACTGTGTTCAACACTCTGGCCTTCCTGGCTCTCGCCTCTCACTTCAGGGCCATGTGCACCGACCCTGGAGCTGTGCCAACAGGGAACGCCACTAAAGAGTACATCGAGAGTCTTCAGCTGAAGCCGGGACAGGTGGTGTACAAGTGTCCCAAATGCTGCAGCATCAAGCCTGACCGGGCACatcactgtagTGTGTGTAAGCGCTGCATAAGGAAGATGGACCACCACTGTCCCTGGGTTAACAACTGTGTGGGAGAGAACAACCAGAAGTTCTTTGTGCTCTTCACAATGTACATTGCACTCATTTCCCTCCACTCTCTGGTGATGGTGGTCTTCCACTTCCTGTACTGCTTCGAAGATGATTGGACAAAGTGCAGTTCCTTCTCACCTCCTGCGACcgtcatcctcctcatcctcctgtgCTTTGaggccctcctcttcctcatcttcacCTCTGTGATGTTCGGGACTCAGGTCCATTCCATCTGTACAGACGAGACGggCATCGAACGTCTGAAGGGGGAGCAGGCCAGGTGGGAGAAGACTTCCTGCTGGGAGGCGATGAAGTCAGCGTTTGGAGGGCCCTTCTCCCCATCCTGGCTCAGTCCCTTCTCTGACCTCCGCTGTAAGAGGGATCCCAATGACCACGTGGCGCTGCCGCAGGGGGAGATCATCGAGGACGACGTCATAGAGATACCGCTGGTCTAGTGTCGTGAGACTCCCGTAGAactagaatgaatagaatgggcGTGGAACCTCGCACCCTGGCAGGTTTTGACTGGTGAACTCCTGGGTACACTAGCTATGGAAGCCTGGTGTTATGATCCATTATGGTGTCGTTGACTTAATAATTAGGAGGGTGATttacatttgtcctatttcaGACATGTACCAGTGTGTATTATACACGTGTGAATTGTACATTTTTgtaggggggggggaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118815 lncRNA downstream 1613 1707563 ~ 1707903 (-) True G105386
TU118814 lncRNA downstream 7046 1701371 ~ 1702470 (-) True G105385
TU118810 lncRNA downstream 16116 1689966 ~ 1693400 (-) True G105381
TU118665 lncRNA downstream 26490 1682769 ~ 1683026 (-) True LOC110515405
TU118804 lncRNA downstream 29600 1679618 ~ 1679916 (-) True G105376
TU118823 lncRNA upstream 4726 1736702 ~ 1736975 (-) True G105394
TU118832 lncRNA upstream 24427 1756403 ~ 1756941 (-) True G105402
TU118838 lncRNA upstream 30339 1762315 ~ 1763503 (-) False G105406
TU118840 lncRNA upstream 30339 1762315 ~ 1764283 (-) False G105406
TU118841 lncRNA upstream 30339 1762315 ~ 1764283 (-) False G105406
XM_021593425.2 mRNA downstream 4653 1702951 ~ 1704863 (-) True kiaa1143
XM_036935030.1 mRNA downstream 26027 1573402 ~ 1683489 (-) False LOC110515405
XM_036935016.1 mRNA downstream 252383 1427251 ~ 1457133 (-) True LOC110515934
XR_005034578.1 mRNA downstream 393271 1315664 ~ 1316245 (-) False LOC118937319
XR_005034579.1 mRNA downstream 393436 1315664 ~ 1316080 (-) False LOC118937319
XM_036935194.1 mRNA upstream 189034 1921010 ~ 1925939 (-) True nrsn1
XM_036935207.1 mRNA upstream 570660 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 698299 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 699789 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 714398 2446374 ~ 2449761 (-) True sox4b
TU118763 other downstream 67784 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 90480 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 167810 1540730 ~ 1541706 (-) True G105285
TU118550 other downstream 367181 1333986 ~ 1342335 (-) False G105220
TU118889 other upstream 180616 1912592 ~ 1916995 (-) False G105427
TU118905 other upstream 180616 1912592 ~ 1916995 (-) False G105427
TU118893 other upstream 180696 1912672 ~ 1916995 (-) False G105427
TU118896 other upstream 180696 1912672 ~ 1916995 (-) False G105427
TU118901 other upstream 180696 1912672 ~ 1916995 (-) False G105427

Expression Profile