RNA id: XM_036935153.1


Basic Information

Item Value
RNA id XM_036935153.1
length 3139
RNA type mRNA
GC content 0.50
exon number 16
gene id slc6a3
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1816808 ~ 1853570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggttGTGTCATATTTCTAGTGGTCCCACAGATCCCTCCTTACAGACTTACAGAACAACAGGTGAAACGGACCCTTACAGAGCAGTCTAGTCCCCAACCCAGAGGTCCACACACCTCCGAACCCCcagacatctctctctttctttctccttctctattcctctctctgtctccccatttGCCTTCTTCGGTTCCAGGTCTGAGTTCCAACCATCCGAGGTCTTCCATGATGTTCATCAGTAACAGAGTCTGGATGGAGGAAGAGCAACAACGCAGTAGGAATTAAAACGGGTTGAAGAtacatttttgggaaaaaaagaCCACAAGGTTTTATTTCCTCGTCATCTATAAAGCTGATTCCCTCTGCAGCCATGGAGCAGCCCGTGATGAAAGCCAGatctccagtgggtcagatgtgtTCGGTGGTGGCACCCGCCTCGGCCAAGCAGCCTTCCTCcgccccctctccctccaacacCATGGGCCCCAAGGAGGTGGAGCTGATTCTGGTTAAGGAGCACAACGGGGTCCAGTTCACCACCTCCACGTTGGTCAGCCCTGCTGGGCACCCCCACGGCCTTGCTCTGGGCCCCAGTCACGGACACACCCCTGTCCccggagaagagagggagacctGGGGGAAGAAGATCGACTTTCTCCTGTCTGTGATAGGGTTCGCTGTGGACCTGGCCAACGTGTGGAGGTTCCCCTATCTCTGCTATAAGAACGGAGGAggAGCGTTCCTGGTGCCCTATCTGTTCTTCATGGTGATAGCAGGCATGCCTCTGTTCTACATGGAACTGGCTCTGGGACAGTACAACAGAGAGGGGGCCGCTGGTGTCTGGAAGATCTGCCCTATATTCAAGGGTGTTGGTTTCACAGTGATCCTGATCAGTCTGTACGTGGGCTTCTACTACAACGTGATTATAGCCTGGGCCCTGTTCTACCTGTTCTCTTCCTTCACCGGAGAGCTGCCCTGGGTCCACTGTAACAACACCTGGAACAGCCCCAACTGCTCGGACCTCTGGGCCTTCAACAACTCCCTCAACGACACACACAAGTCCACCCCCGCAGCCGAGTACTTTGAGCGTGGGGTGCTCCACCTACAGGACAGTGAGGGTATAGCTGACCTGGGTCTGCCTCGTTGGCAGCTGACATCCTGTCTAGCTGTGGTCATCGTGGTTCTCTACTTCAGCCTCTGGAAGGGGGTCAAGACCTCAGGGAAGGTTGTGTGGATCACAGCCACCATGCCCTACGTGGTCCTGACCGTCCTGCTGCTGCGTGGGGTCACCCTCCCTGGAGCCATGGATGGCATTAAGGCCTACCTCAGCGTCGACTTCCTACGACTCTGTGAGCCTCAGGTCTGGATAGACGCTGCCACTCAGATCTGCTTCTCTTTGGGAGTCGGGTTTGGTGTGCTAATAGCGTTCTCCAGCTATAACAAATTCAGCAACAACTGCTATAGAGATGCCATCATCACCAGTTCCATCAACTCCCTGACCAGCTTCTTCTCCGGCTTCGTCATCTTCTCCTTCCTGGGTTACATGTCCCATAAACACAGCGTGCCATTGGACAAGGTGGCCACAGACGGTCCTGGTCTGGTGTTCATCATCTACCCAGAGGCCATTGCAACATTACCAGGATCCTCAGTGTGGGCAGTCATCTTCTTCATCATGCTGCTGACTCTGGGCATCGACAGTGCTATGGGAGGGATGGAGTCAGTGATCACAGGATTGATGGATGAGTTCAAGTTTCTCCACAAACACCGGGAACTCTTCACCCTCTTCATCGTTGTGTCCACCTTCCTAATCTCACTGTTCTGTGTCACTAATggtgGCATCTATGTGTTCACTCTGCTGGACCATTTTGCTGCTGGGACATCCATTCTCTTTGGAGTGCTTATTGAGGCCATCGGCATCGCCTGGTTCTacgGAGTGGATCGGTTCAGTGACGACATCGAGGAGATGATCGGACAGAGACCAGGCCTGTACTGGAGACTGTGCTGGAAGTTTGTCAGCCCGTGCTTCCTCCTGTTCATGGTGGTGGTGAGCTTCGCGACCTTTAACCCTCCTAACTACGGGACGTACACGTTTCCCATATGGGCCAACATGATTGGCTGGTGCTTGGCTATATCCTCCATGACCATGGTGCCTCTCTATGCCATGTACAAGATGTGCACCTTACCTGGAAAGTTCTGTGATAGACTGGCCTACGCCATAACGCCTGAGCACGAACACCACCTGGTGGATAACGGAGAAGTTAGGAGGTTTACGCTCCAACACTGGATGGTGATCTGAGCCCAGGAAGAAGACAGAGGTCCGTTCAcatggaggatggatggatagagagagcgagggagggatggatagagtgagtgatggagggatggatagagtgagtgagtgatggatggctagagagagggaaggatggatggatggatagagagagggaaggatggatggatggatagagagagtgatggagggatagagtgagggatggatggagggatagagtgagggatGGATGGCTAGAAGGAGGCACGGCAGACATGCGAAGAGAGTTTATCCCGtaacaagaggagagagaagtgttTGAAATGCCAACCAAGCTGTCAAATCGTAGTGGTCTTTAATTTCCTCAATGGACGTGTGGTTGTGTGCTGTGATCTAGATCAGGATGTTGGTGATGTTCGGTCAAAATATCAATCTTAAACAATGACTGTTATGATTATGGATAATACACCTATATATTCATGTTTAATTTGTGAGCTGAGGAAAAATCTGAGCATTTGGTTTAGTGTAAAATATATTATATGATTATCTGTTGTAGAGGTAACTAAGAGAAATAGTATTTATTACAGAAACAACATAGCCAATAACAAAAGGACATGACTGTATTTAACTGTATATGAAAGTGTACATGTTTTAAGTTAAGTTTGTGACAACATATACCCGTTACATAGTAAACTAGCTTTTTATATTGTGCCAACAGTTTCCTTTTGACACTTCAAAAATGTGTTGTCTGTTACTTCTCTTCtgaaaatgttttcaaatgtaccGAGGGGGGGtccacccttgataaagatgagaaaaaaataaatattaaataaattatttaaatactgagctatg

Function

GO: NA

KEGG:

id description
K05036 SLC6A3, DAT; solute carrier family 6 (neurotransmitter transporter, dopamine) member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118381 lncRNA upstream 5000 1811581 ~ 1811808 (+) True G105116
TU118380 lncRNA upstream 6503 1810076 ~ 1810305 (+) True G105115
TU118267 lncRNA upstream 9141 1806903 ~ 1807667 (+) False G105033
TU118268 lncRNA upstream 9141 1806903 ~ 1807667 (+) False G105033
TU118270 lncRNA upstream 9141 1806903 ~ 1807667 (+) False G105033
TU118389 lncRNA downstream 447 1854017 ~ 1854230 (+) True G105122
TU118386 lncRNA downstream 739 1854309 ~ 1854718 (+) True G105119
TU118388 lncRNA downstream 1590 1855160 ~ 1855480 (+) True G105121
TU118387 lncRNA downstream 2014 1855584 ~ 1857117 (+) True G105120
TU118430 lncRNA downstream 7666 1861236 ~ 1861734 (+) False G105136
XM_036935139.1 mRNA upstream 21870 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA upstream 21870 1745298 ~ 1794938 (+) True LOC110514512
XM_021594953.2 mRNA upstream 109133 1704889 ~ 1707675 (+) False tmem42a
XR_005034588.1 mRNA upstream 109133 1704889 ~ 1707675 (+) True tmem42a
XM_036935053.1 mRNA upstream 118439 1683561 ~ 1698369 (+) True gpd1l
XM_036935163.1 mRNA downstream 11795 1865365 ~ 1901448 (+) False LOC110511503
XM_036935165.1 mRNA downstream 11795 1865365 ~ 1901448 (+) False LOC110511503
XM_036935173.1 mRNA downstream 11795 1865365 ~ 1901448 (+) False LOC110511503
XM_036935178.1 mRNA downstream 11795 1865365 ~ 1901448 (+) False LOC110511503
XM_036935186.1 mRNA downstream 11795 1865365 ~ 1901448 (+) False LOC110511503
TU118283 other upstream 106251 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 116377 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 463945 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 663059 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 944293 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 667146 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 864391 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1121253 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1353227 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1513635 3367205 ~ 3425955 (+) False mboat1

Expression Profile