RNA id: XM_036935165.1


Basic Information

Item Value
RNA id XM_036935165.1
length 2412
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110511503
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1865365 ~ 1901456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAACACCTGCCCTCCCGTGACACCTCGGCGCTGAACCGTAGGAAAACTGTATGATTACACACGAGACTTCTACCGTCACCTGGGCATAACGGGGCACGCAACCTGACTCTGCGTGTGCCTTTTTATGAAGTTGTTACCGTTACATTCAGAAACATTTTTTACCAGGAAGTATTTACCTGGATAACATGCACGCTTGAAGAACTAAGCTAACTTCAAAGTAGCATGACTTTCGTTCAGGTTGGACTATTTTATGCGAAGTTCAAGATGCTCATTTGAAAACGTGGACTGAATGGACCTAAAATATCCGGTAATGGCGTATCGATAATGACGACCCGTCCTATCCTGTAACAGAAGTGGTCAACTACGttgtaattggatgcattttTATTTGTGTGGGGGAAATGATCTAGCACAGCCTTCGGTACTTTCACCCCGATCGTCATGAACTCTGAAAAGCCCCGTTTTCTATCGCAACCTGTCGTGAAGAACATATTCGTGTATCGAAATGGAGATCCGTTTTACGAGGCTCGCCGATTAGTGGTAAACCAAAAGAGAGTGTCCAATTTTGATACTTTTCTTCGAGATGTGACGGGGGGTGTGCAGGCTCCGTTTGGAGCGGTTCGGAACATCTACACCCCTAGAATGGGCCATCGGGTGGCCTGCCTGGACCATCTACAGAGCGGGGAACAATATGTCGCTGCGGGGAGAGAGAAATTCAAGAAATTGGATTATTCACAGATAGGATCCAGAAAGAAGAGGATGCTCCTTACTTCTTCAGGGCAGccttATCCACAGGCTAAACCGGTGCCCCAGAGTCGAATCATTGTATCAGCAAGATTCCTGAAACCCATCAAAGAGCCCTGTTCCATTTTCGTGGTAGTGAACGGTGATGTGTTGACCCCAGCGTTAAGACTGCTGATACCCCAACGGATACTGGGCCAATACGACAGGGTTCTGGAGATGATCACTGACAAAATGGGTTGGAGAATCCTGGGGTGTGTACGAAGCCTTTACACCTTTGATGGTAATCATGTGAACGATGGAAAGGACTTGGAGAGTGGGCAGTTTTACGTGGCTGTTGGGAGAGACAAGTTTAAAAGACTTCCCTACAGTGACCTTCTGTtcaccaaaccaaggggcataCGAAGGACTACAGGATCCAAAGCTTCCTCATTACCGCCAATATACACATCTGGAAAGCAGAACAGAAACAGTTTGACGGTGAACCACAGTAAGTCTATGTGGCGGTGCAGAGAGCCAGCAGACGCCAAGATATCTGCGCATGACACGGACCGCACGTCGTCCATCGTCAGGCAGATCTCCCAGCAGAGACTCATGATcctcaggaagaggaggagtggtcTCAGTATCTCCCTGGGAACACAGGACAACGACGGGGAGGTGCAGACTGATGAAGGCCCTTTAGAGGATGCAGACCAGTCTCCACAGAGTGACCTGACCTCTGAAGAGGTTAGACACACCTCTCCACAGAGTGACCTGACCTCTGAAGAGGTTAGACACACCTCTCCACAGAGTGACCAGACCTCTGAAGAGGTTAGACACACCTCTCCACAGAGTGACCTGACCTCTGAAGAGGTTAGACACACCCCTCCACAGAGTGACCTGACCTCTGAAGAGAAGCCAACGGGGGACAGTAAATCTACTGACACAGAGGAGAGTCCAGAGGGAGAAaaaggtgaagaggaggagactgcAGTAGCTGAGAACTCCACCGAGGAACAAGGTGATGACAAGGAAGATGTTACTAAAACCACAGAGGAACAAGGTGATAACAACGAAGATATTACTAAGAGGATTACCACAGAGGAACAAGGTGATAACAACGAAGATATTACTAAAACCACAGAGGAACAAGGTGATAACAACGAAGATGTTACTAAAACCACAGAGAAACAAGGTGATAACAACGAAGATATTACTAAGACCACAGAGGAACAAGGTGATAACAACGTAGATATTACTAAGACCACAGAGGAACAAGGTGATAACAACGAAGATATTACTAAAACCACTGAGGAACAAGGTGATAACAACGAAGATATTACTAAAACCACTGAGGAACAAGGTGATGACAACGAAGATATTACTAAAACCACTGAGGAACAAGGTGATAACAACGAAGATATTACTAAGACCACAGAGGAACAAGGTGATAACAACAAAGATATTACTAAGACCACAGAGGAACAAGGTGATAACAACGAAGATATTACTAAAACCACAGAGGAACAAGGTGATAACAAGGAAGATATTACTAAAACCACAGAGGAGGACTCAGACAGTGTGGTTGGTGAGAAGAGCCTGGAGACCAAGCTACAGGGAAGTCTGGAGAACCTGGTCCTGAAGAAATGAAGgctggagaggggaaggagagagagagagaaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118430 lncRNA upstream 3631 1861236 ~ 1861734 (+) False G105136
TU118431 lncRNA upstream 3631 1861236 ~ 1861734 (+) False G105136
TU118432 lncRNA upstream 3631 1861236 ~ 1861734 (+) False G105136
TU118434 lncRNA upstream 3631 1861236 ~ 1861734 (+) True G105136
TU118387 lncRNA upstream 8248 1855584 ~ 1857117 (+) True G105120
TU118466 lncRNA downstream 864 1902312 ~ 1903179 (+) True G105158
TU118467 lncRNA downstream 1983 1903431 ~ 1903890 (+) True G105159
TU118470 lncRNA downstream 5048 1906496 ~ 1906960 (+) True G105162
TU118397 lncRNA downstream 11016 1912464 ~ 1917016 (+) False G105123
TU118399 lncRNA downstream 11233 1912681 ~ 1917170 (+) True G105123
XM_036935153.1 mRNA upstream 11795 1816808 ~ 1853570 (+) True slc6a3
XM_036935139.1 mRNA upstream 70427 1745298 ~ 1794938 (+) False LOC110514512
XM_036935148.1 mRNA upstream 70427 1745298 ~ 1794938 (+) True LOC110514512
XM_021594953.2 mRNA upstream 157690 1704889 ~ 1707675 (+) False tmem42a
XM_036935200.1 mRNA downstream 215105 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 264673 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 516738 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 1076788 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 1077338 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 154808 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 164934 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 512502 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 711616 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 992850 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 619268 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 816513 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1073375 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1305349 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1465757 3367205 ~ 3425955 (+) False mboat1

Expression Profile