RNA id: XM_036961504.1


Basic Information

Item Value
RNA id XM_036961504.1
length 1518
RNA type mRNA
GC content 0.63
exon number 6
gene id LOC118944029
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2166121 ~ 2177996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTGCCTTCTTCCACTTTCTCTGTGTGAGGATCATGTCTGCCAACTTCCACGGAAgtgtgccccctCCTGACCCCTCCATCCagccccctccatcctccacacaGCCTTACCCCTCCATCCAGCCCCCTCAGTCCTCCAAACAGCCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGGCCCCTCAACCCTCCACACAGCCTGACCCCTCCATCCAGCCCCCCTCAATCCTCCACACAACTGACCGCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCAGTCCTCCACACAGCCTAAACCCTCCATCCAGCCCCCTCAGTCCTCCACACAGCCTGACCCCTCCATCCAGCCCCCTCCGTCCTCCACACAGCCTTACCCCTCCATCCagccccctccatcctccacacaGCCCCTCAACCCTCCACACAGCCTGACCCCTCCATCCAGCCCCCCTCAATCCTCCACACAGCCTGACCGCCTTATCCagccccctccatcctccacacaGCCTGACCACTCCATCCAGACCCCTCAAATCTCCACACAGCCTACACCCTCCATCCAGCCCCCTCCGTCCTCCACACATACTGACCCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCACCTGACCCCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCCGTCCTCCACACAGCCTTACCCCTCCATCCagccccctccatcctccacacaGCCTGATCCTTCCATCcagccccctccatcctccccacaGCCTGACCCCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAgcccccctccatcctccacacaCCTGATCCCTCCATCCAGCCCCCTCCGTCCTCCACACAGTCTACACCCTCCATCCagccccctccatcctccacacaGCCTGACCGCTCCATCCagccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCTCAATCCTCCACACAGTCTACACCCTCCATCCAGCCCCCCTCCATCTTCCACACAGCCTACACCCTCCATCCAGCCCCCCTCCATCCACACAGTCTACACCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCCTCAATCCTCCACACAGCCTACACCCTCCATCCAGCCCCCTCAATCCTCCACACAGTCTACACCCTCCATCCAGCCCCCCTCCATCCGCCACACAGCCTACACCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAgcccccctccatcctccacacaGCCTACACCCTCCATCCAGCCCCCCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119265 lncRNA upstream 3081 2161395 ~ 2163040 (+) True G105673
TU119264 lncRNA upstream 5092 2160815 ~ 2161029 (+) True G105672
TU119262 lncRNA upstream 5634 2159572 ~ 2160487 (+) True G105670
TU119245 lncRNA upstream 17410 2148466 ~ 2148711 (+) True G105654
TU119230 lncRNA upstream 32500 2132755 ~ 2133621 (+) True G105642
TU119281 lncRNA downstream 6052 2184048 ~ 2191289 (+) True G105683
TU119293 lncRNA downstream 34327 2212323 ~ 2213776 (+) True G105694
TU119301 lncRNA downstream 45203 2223199 ~ 2223419 (+) True G105700
TU119303 lncRNA downstream 47722 2225718 ~ 2226088 (+) True G105702
TU119305 lncRNA downstream 49474 2227470 ~ 2227727 (+) True G105704
XM_036935200.1 mRNA upstream 45666 2116553 ~ 2120455 (+) True LOC110516539
XM_036935163.1 mRNA upstream 264673 1865365 ~ 1901448 (+) False LOC110511503
XM_036961507.1 mRNA downstream 240190 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 800240 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 800790 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 800817 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 800833 2978829 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 455564 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 465690 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 813258 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1012372 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1293606 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 342720 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 539965 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 796827 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1028801 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1189209 3367205 ~ 3425955 (+) False mboat1

Expression Profile