RNA id: XR_005034601.1


Basic Information

Item Value
RNA id XR_005034601.1
length 3078
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118937335
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2273420 ~ 2440302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGAGGGCGGGACTGAAACTGGAATGAACAAGGCGCGGCCAAGATTCCCCTTCACACGTGCAGACAAAGAGCGCCAACAACACAACCCAAATATGCACTTTTAAACTTTTCCAAACGAAACGGACGACTTCCACGAACATAGGAAATGCAACGGTGGAATGAAACCTGTTTAATTTGAAAAGCTTTTCTTTTTCGGGAGGCCTGCATTGGGAAAAAGTACCTTGGAGCCGTACCTTTACAACAGGAGTTTAGCTGCAGGACCTCTGAATAACCATCTACACTGTGGCGGATTTACCCGCGACCTGTACCGGACTCATGGAATCGAAATTGGATTATATCTTCCGGCGCACATCACAACAAAGGCTTTCCAAATTGGATAGGCGTCTCATCGGACCCTCAAGGACAACATGGACTTGGAACCATTTTTATCTCCTAGAAACATGAAGAAAATGAAATATTCTACATTTCTGTGGATATCCATGGCTACAGGAAGTAGTTAAAGAGGAGCCGAGCACCATAACTACAGGAAGTAGTTAAAGAGGGACAGAGCACCATAACTACAGGATGTTAGATGAAGAGGAGCAGAGCACCATAACTACAGGATGTTAGTTCAAGAGGAGCAGAGCACCATAGCTACAGGAAGTAGTTAAAGAGGAGCAGAGCACCATAACTACAGGAAGTAGTTAAAGAGGGACAGAGCACCATAACTACAGGATGTTAGATGAAGAGGAGCAGAGCACCATAACTACAGGATGTTAGTTCAAGAGGAGCAGAGCACCATACCTACAGGAAGTAGTTAAAGAGCAGAGCACCATAACTACAGCATGTAAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcaccataactacagcatgttagttcaagaggagcagagcagagcaccaTAACTACAGCATGTTCGTTCAAGAGGGACAGAGCAACATAACTACAGGATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGGATGTTAGTTCAAGAGGGACAGCGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCATCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGGATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagTACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGGTATTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGATAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGATAGTTCAAGAGGGACAGAGCACCATAACTTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcaccataactacagcatgttagttcaagagggacagagcagagcaccataactacagcatgttagttcaagagggacagagcagagcacCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGGATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCACCATAACTACAGCATGTTAGTTGAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTCAAGAAGGACAGAGCACCATAACTACAGCATGTTAGTTGAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGGACAGAGCACCATAACTACAGCATGTTAGTTCAAGAGGAACAGAGCAGAGCACCATAACTACAGCATGTTAGTTcaagagggacagagcagagcacCATAACTACAGCATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119656 lncRNA downstream 17656 2413523 ~ 2414109 (-) False G105964
TU119655 lncRNA downstream 17656 2413650 ~ 2414109 (-) True G105964
TU119649 lncRNA downstream 25216 2406019 ~ 2406549 (-) True G105959
TU119644 lncRNA downstream 29268 2401450 ~ 2402497 (-) True G105955
TU119632 lncRNA downstream 45048 2385595 ~ 2386717 (-) False G105951
TU119692 lncRNA upstream 22509 2462811 ~ 2463049 (-) True G105988
TU119694 lncRNA upstream 24061 2464363 ~ 2464637 (-) True G105990
TU119696 lncRNA upstream 29271 2469573 ~ 2470510 (-) True G105992
TU119698 lncRNA upstream 32892 2473194 ~ 2474519 (-) True G105994
TU119699 lncRNA upstream 34390 2474692 ~ 2475026 (-) True G105995
XM_036935207.1 mRNA downstream 127884 2302636 ~ 2303881 (-) True LOC118937333
XM_036935194.1 mRNA downstream 505826 1921010 ~ 1925939 (-) True nrsn1
XM_036935127.1 mRNA downstream 699432 1709516 ~ 1732333 (-) False zdhhc3a
XM_021593876.2 mRNA upstream 6072 2446374 ~ 2449761 (-) True sox4b
XM_036961511.1 mRNA upstream 73408 2513710 ~ 2516419 (-) True LOC110512766
XM_036961522.1 mRNA upstream 77885 2518187 ~ 2519022 (-) True LOC110514306
XM_036961533.1 mRNA upstream 93500 2533802 ~ 2536162 (-) True LOC110511524
XM_036935222.1 mRNA upstream 204588 2644890 ~ 3390745 (-) False cdkal1
TU119611 other downstream 68234 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 311264 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 470178 1958484 ~ 1961587 (-) True G105492
TU118914 other downstream 513738 1917351 ~ 1918027 (-) True G105428
TU118913 other downstream 514770 1912672 ~ 1916995 (-) True G105427
TU119710 other upstream 42639 2482941 ~ 2483356 (-) True G106001
TU119712 other upstream 43558 2483860 ~ 2485123 (-) True G106003
TU121654 other upstream 1312259 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other upstream 1312259 3752561 ~ 3776178 (-) True LOC110506994
TU121876 other upstream 1551024 3991326 ~ 3992847 (-) True G107456

Expression Profile