RNA id: XM_021593876.2


Basic Information

Item Value
RNA id XM_021593876.2
length 3388
RNA type mRNA
GC content 0.42
exon number 1
gene id sox4b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2446374 ~ 2449761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACGGGGAGAAATTAGAGGCTGCTGAAAGTTACCGAGTGCGCAGCAGAAAGGTAGATCCTAGTTCTAGTGAAACAAGCTTCTTCCCGCATGGTGCTCGGAAAGAAAAGCTATGCAGAAAAAGAGTTACCTTACTTTAGAAACTTTGAACATTTTCAGTGTCAGTGCGCTCACACAGCCACTCAGTTTGCTTTCCGCTGCTTACACGGCACATGTTTATGTCCTACACGACTGCTAGAGTTGATTAGCTTAGGCTACATAAAGCATTGTCGGAGGAAACAGAGTGGAAAACGGGGGACAGTTTTACACCGTTCGTTCTGTATCATATTACAGAGACTCgaaaaaaataacttttaacaaATCCAGCATTTTTTAACGGCTATCAACGGATTCCTGTGGTTCCGGTTCGGCACATCTCAGGACTGACTTCTATTTTCACACAGCCAGCTAGAATTGTAAAGTAAaataattttatttaaaaaaaataaacctaCAGTGTGGAACTGAACTGGAGAGCAAGCAGGCGCACTCTCATTGACATTATAATCATGGTACAGAAGACAAGTAATGCGGAGAGCTCCGAGGCTGTGTTCGAGGGAGAGTCGTCCGATTCCGGAGCTATGGACCTGGACATGGCATCCTCACCGAGCCCCGGATCCACGGCTTCTTCCGCGGGGGAAGGCAAACTGAACCCCGCCTGGTGCAAAACACCCACCGGTCACATCAAGAGGCCGATGAACGCTTTCATGGTGTGGTCACAGATTGAAAGGCGTAAAATTATGGAGCAGTCACCGGACATGCACAACGCGGAGATATCCAAGAGACTGGGCAAGCGCTGGAAGCTACTGAAAGACTGCGACAAGATCCCCTTCATACGAGAGGCGGAGCGGCTCAGACTCAAGCACATGGCGGACTACCCAGACTACAAGTACCGGCCCAGAAAGAAGGTGAAGTCCAGCAGCTCCAAACCGGGGGGCGAGAAGGAGGGAAAGGTCAGCGGTAGCAACTGTAACACCAGCATGAAACAATCTTCTAAAAAGAGTGGCTCAAAATCATCCAGTAAACCTCATAAAATCGTTTTTGGGAACAGCACCAAAACACCATCATTCCCAGAACAAGTCATCGGCACAGATCACCATTCTCTTTACAAATCCAAGTCTGTTTCTGCTGCCAAACAAATACCTGACAAGAAGAAGCGTATGTATGTGTTCGGGGGCAGCAGCCTTAGCCACAGTGTGAGCCCGTCTTCAGCAGCGGTGCCCGCCAGTCCCACACTCAGCAGCTCCGCGGATTCCAGCGAACCACTCAGCCTGTACGAGGACGCGACAGCCAGCAGCAGGCAGGGCGGCGAGTCTCCCTCCAGCGCCTCGGAAGACTACACTACTATGCGGGCgtcctctcctactccctccgCTTCTcactcctcgtcctcctcccaaTCCTCTTCATCAGATGAGGAGTTTGAGGATGATCTACTGGACATTAACTCTAGCCCTGGTTTTGACAGCATGTCTCTGGGAAGCTTTGGGTCCTCGGTTTTGGACAGAGACTTGGATTTTAATTTCGAGTCGGGCTCCGGTTCTCACTTTGAGTTTCCCGACTACTGCACCCCAGAGGTGAGCGAGATGATTTCAGGAGACTGGCTAGAGTCGACCATTTCTAATTTGGTGTTCACGTATTGAGCGAGAGAAAAGGAGAACGAGAAAACCCACAAGCAGGAAATGTTGTCTTACTATTCTGAGCAAAAAAAGGGATTCCGGTAAAGTGATTTTGTGTCATACCGTAACCTACCAAGGGTCCCTCCCGCCGAGAAAGAGACTGCAAGTCCCCACGCGCTGACTGTTGAACAAAGCGAGAGAATAACTTGCTTTTTATTTCAAGAATCAACTGTCGACTGTTATTATGAGACACGGCTACAAGTAAGCAGAAGTATTGCCTCGACTGGAGAGGAAGATATTGTTGCGCCCTGAGTAGGAGTGATCGGGTCCTATTGAAATAAACACTCGATCAGAACTGGAAaactgtgattgatttgcacgaTTATAATGATGGCGGGTTTAGGTCAGCTATACTTTATTAATCAATGTGAGTTACTTAAAAGGGACATGTTGAGAAACGTTTTATGATCGCCAAGTGAACTTCAACAGACTTGCAGAGGTACAGAAATAGGCTGGATGTCTGGacggttttttgttgttgtcatcgAGGCAGATGGATTTATGAACCAGGTGGGTTGTTGACCTAAAAAGTCTAACCTTTTTTAAAAGATAAAACGCATGATGTTACCTGTCCTCTGTTTTACTGAGATGTATGTTAGACTGTCGAACAGTTGAAACTAGTTTTAGGGTTATTTAAATGGATAGATGGGCGCTATGTTtgattcctttttttttttacctaaaaGGAACCAAAAAAAATCACCAGCTGTTTTAATTCTTAACTTCAGGATTCAAACGCAACTGAAATCTGTGCTGAACTTTATACACATCTCTACAATTCAGGACCAaaattattttatgttttttCTGATGTTATGTATAGAGAAATTCTCAccgaattattttttttttcatcctCGAATTTCCTTTTGTTCATTTTTTCAGAGGACATTTTTATATGATGTATTTATATACTGGCCAAAACATTTTCaacttaattattattattatttttttcttgtaCTGGTCTTGTTATAATGTTTTCCCTCACCGTCTGTTTCCTTCGCTGAAAGAAGGGCTAGACTTTTCACTTTTGATTTTTTATATTTAAATGTAGACTTTTGACACTTAAAGAGAGGAAACATTTGTTTATTTTGTCCGTGTATTTTTGTACAGATATATATCAAAGGGGGTGTCAATCGGTGTATATCGCTGTTTGGATTTCCTAATTTTAAAGATCCAGGTGGCCGGTTATCTCATGAATCGGCCTTCTGTCCATGTTTACAGTATCAATCTGCAGGCTTCTTAAAGACACAGTACCACATTTCAATACCCCTGTGAACATGCGcttcaactcacacacacacacacacacacagtattttgAGCAGGCACACTTCTGCATTTCATTTTAGAATCTTGCCTAATAAAGAAAGATTGTAGCTTTAAATGAACAATTTATTGGGTTTAAAACCACCGGATGGAAGAATATCAAATCATATAAAGTAATATTCAAATTGGGTATTTTGAGTTCCCGCAAACAACAATTATGTAGACCAACTGCTTTTCTCATTGTATTTGAATATGTAATCTTTTCTACTTGTTCGCTAACTCTAGCTAATTGTTTTAGTATCTTATGGCATGGTGAATGAATAGTATTTTGTATTTCAGATTCAGGTTATAGctgttgtgtttatatatatatatatataaaaaaaaagataaaaaaa

Function

GO: NA

KEGG:

id description
K23581 SOX4; transcription factor SOX4 (SOX group C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119549 lncRNA downstream 6136 2273420 ~ 2440238 (-) False LOC118937335
TU119551 lncRNA downstream 6136 2438014 ~ 2440238 (-) True LOC118937335
TU119552 lncRNA downstream 13190 2431050 ~ 2433184 (-) False LOC118937335
TU119656 lncRNA downstream 32265 2413523 ~ 2414109 (-) False G105964
TU119655 lncRNA downstream 32265 2413650 ~ 2414109 (-) True G105964
TU119692 lncRNA upstream 13050 2462811 ~ 2463049 (-) True G105988
TU119694 lncRNA upstream 14602 2464363 ~ 2464637 (-) True G105990
TU119696 lncRNA upstream 19812 2469573 ~ 2470510 (-) True G105992
TU119698 lncRNA upstream 23433 2473194 ~ 2474519 (-) True G105994
TU119699 lncRNA upstream 24931 2474692 ~ 2475026 (-) True G105995
XR_005034602.1 mRNA downstream 6072 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA downstream 6072 2431765 ~ 2440302 (-) False LOC118937335
XM_036935207.1 mRNA downstream 142493 2302636 ~ 2303881 (-) True LOC118937333
XM_036935194.1 mRNA downstream 520435 1921010 ~ 1925939 (-) True nrsn1
XM_036935127.1 mRNA downstream 714041 1709516 ~ 1732333 (-) False zdhhc3a
XM_036961511.1 mRNA upstream 63949 2513710 ~ 2516419 (-) True LOC110512766
XM_036961522.1 mRNA upstream 68426 2518187 ~ 2519022 (-) True LOC110514306
XM_036961533.1 mRNA upstream 84041 2533802 ~ 2536162 (-) True LOC110511524
XM_036935222.1 mRNA upstream 195129 2644890 ~ 3390745 (-) False cdkal1
XM_036935217.1 mRNA upstream 195129 2644890 ~ 3391012 (-) True cdkal1
TU119611 other downstream 82843 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 325873 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 484787 1958484 ~ 1961587 (-) True G105492
TU118914 other downstream 528347 1917351 ~ 1918027 (-) True G105428
TU118913 other downstream 529379 1912672 ~ 1916995 (-) True G105427
TU119710 other upstream 33180 2482941 ~ 2483356 (-) True G106001
TU119712 other upstream 34099 2483860 ~ 2485123 (-) True G106003
TU121654 other upstream 1302800 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other upstream 1302800 3752561 ~ 3776178 (-) True LOC110506994
TU121876 other upstream 1541565 3991326 ~ 3992847 (-) True G107456

Expression Profile