RNA id: XM_036961511.1


Basic Information

Item Value
RNA id XM_036961511.1
length 1912
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110512766
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2513710 ~ 2516419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttccaagtgaccccaaacttttgaatggttttggatatcatgattatttgcataaATTAGGAGGCCATTGTTTAGCAGTCTCTGCCATGATGTGCTGCAGCAGTAGGCCTAACAGCAGAAACATTGCTAAACTAATACATTCCTCTCCTGCTAGATGTAcaattaaaggggaattacagattttttttacatttgttagCATTTTTTTTCAGACCTCTACATTTTTCTGTtgatgtgatttaagcattgacTCAGAACATCAATTTCCATTGTTTCTCTCTGAATAATTGTAATATTGAGAGTAAAAAACAGAATTTGGAATAattcaaaataacattttatagGGCCCCCTTAGAGTTGTTATTTGACTATTATATATTGCCAGAAAACACATATCTTGTATAAGGAACAGGGGAAGAGTTGcagggttgaggagaggagaagaatttGACGATTTGAAAGCTATTAAAAAAATGAGTAGCTCGTGAAATTCATTTTTCTTTATGTAGCTgtcatgctagaaaaggttggagatccctgctgtacaggcttccttattttcactctgtcaattaggttaatattgtggaataactacaatgttgttgatcctcagttttctcctatctcAGCCATTAACGTCACCATTGACCtcaaggtgaaatccctgagcagtttccttcctctctggcaactgagttaggaaggatacccgtatctttgtagtaactgggtgtattgatacaccatccaaagtgtaattaataactggtGTAATTGATGCTCAAAGGTATATTCAATGCCTgcaatattttatatatatatatatatatatatgtgtgttgtttttttgtgCTTGGGAAGGGGTTGTCTTTTTCAACAAGTTGCTGAAATGGCTGGCCAGTTTCCAGGAGAAGCAGGAGGCCTTGGACAATGTGCACCTCCTCATTGGTCATGGGGAAAACAACATGGATGCTGCCCTCCAGGCCCTCTCTCGGGGCATAGAAACATACCAGATTCAACCCGGTTGCCTGGAGCGTTTCTTCAATGATGGCGAGGCTCCTGATGCCGGCCTTCTCCCAGACCATCTGAGTGTCCTTCCAGACTGGACTCTGCTGCCGTTGACGAACGGGACACTTCCCCCCTACATGATATACATTCTGCAGCGGAGGCCAGTGATACAGGGTATCCAAGTGGAAGATCACAGCTTACCCAGTGGGAACATCACCTCTCGGCCCATACGGCAGGCATTCTACGGGCTGCTGCTGGGTGAGGGGAGGGAAGTGGAGGAGTATGACAGGGAAGAAACAAACCTGACCAGCAGCAAGGTTAATGCCAACCTGCCCAGTGCTGCACAACAGCTGCAGCTGGACACACTGGATCAGGCTCCACATTTAGTGCGGCTTGAGGTGTTTTTGGAGACCGTTGGTGTGTCCCAGTCCACTTTGAATGGTCTCCCACTTCACCTGGGACTTCCTGTGGCTGTTACCTACTACTGGCTGAGGCACGCCCATCCCCGACCAGACCTTCCTCTCCTGCAGGCCCTGCTACTAGGACTTGTGTTCGGAGAGCTCTGCAGACAGAGGAAGAGCCAGAGAGGGTTTATAGAGGAGGGACCAGTgttggagaggatgagagggctGATTCAGAGACGTGCTATGAGTCCAGACCTGGGTGTGGCCCACGCCTATAACCAATGGCAGCGCTGCATGAGGGATGGCCTTTACCTGAACCAACTtctgtgtctccctctacctGAGCCTCAGTGTGCCTGGCTGTACAAGGGTAGTCTGCTGCACCAGCTTGTGGGCCAACTGAGACGGGGGGTGACCCCGGATTCTCTCCTGATGGAAGACCCTTCCTCTGGGCAGCTGTACAGAGCCATGCTGGAAGCCATACTCAACTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119714 lncRNA downstream 28088 2485198 ~ 2485622 (-) True G106005
TU119709 lncRNA downstream 31232 2482269 ~ 2482478 (-) True G106000
TU119705 lncRNA downstream 33160 2479196 ~ 2480550 (-) True G105997
TU119702 lncRNA downstream 36160 2475370 ~ 2477550 (-) False G105996
TU119701 lncRNA downstream 36160 2476262 ~ 2477550 (-) False G105996
TU119763 lncRNA upstream 36441 2552860 ~ 2553853 (-) True G106043
TU119764 lncRNA upstream 37578 2553997 ~ 2554368 (-) True G106044
TU119767 lncRNA upstream 39087 2555506 ~ 2555721 (-) True G106047
TU119768 lncRNA upstream 40525 2556944 ~ 2557296 (-) True G106048
TU119772 lncRNA upstream 47319 2563738 ~ 2563959 (-) True G106052
XM_021593876.2 mRNA downstream 63949 2446374 ~ 2449761 (-) True sox4b
XR_005034602.1 mRNA downstream 73408 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA downstream 73408 2431765 ~ 2440302 (-) False LOC118937335
XM_036935207.1 mRNA downstream 209829 2302636 ~ 2303881 (-) True LOC118937333
XM_036935194.1 mRNA downstream 587771 1921010 ~ 1925939 (-) True nrsn1
XM_036961522.1 mRNA upstream 1768 2518187 ~ 2519022 (-) True LOC110514306
XM_036961533.1 mRNA upstream 17383 2533802 ~ 2536162 (-) True LOC110511524
XM_036935222.1 mRNA upstream 128471 2644890 ~ 3390745 (-) False cdkal1
XM_036935217.1 mRNA upstream 128471 2644890 ~ 3391012 (-) True cdkal1
XM_036935254.1 mRNA upstream 876227 3392646 ~ 3405112 (-) False LOC118937342
TU119712 other downstream 28587 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 30354 2482941 ~ 2483356 (-) True G106001
TU119611 other downstream 150179 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 393209 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 552123 1958484 ~ 1961587 (-) True G105492
TU121654 other upstream 1236142 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other upstream 1236142 3752561 ~ 3776178 (-) True LOC110506994
TU121876 other upstream 1474907 3991326 ~ 3992847 (-) True G107456
TU122066 other upstream 1779006 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 1781026 4297445 ~ 4300230 (-) False G107576

Expression Profile