RNA id: XR_005034608.1


Basic Information

Item Value
RNA id XR_005034608.1
length 145
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118937340
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2978236 ~ 2978524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTGATCTCTATAGCCTCTATaggtcctgttctgatctctataggtcctgttctgatctctatagCCTCTATaggtcctgttctgatctctatagcctctataggtcctgttctgatctctatagCCTCTATaggtcctgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120017 lncRNA upstream 6657 2970334 ~ 2971579 (+) False G106238
TU120016 lncRNA upstream 6657 2970853 ~ 2971579 (+) True G106238
TU120004 lncRNA upstream 28532 2947549 ~ 2949704 (+) True G106229
TU119998 lncRNA upstream 36683 2941146 ~ 2941553 (+) True G106224
TU119939 lncRNA upstream 105318 2872322 ~ 2872918 (+) True G106194
TU120023 lncRNA downstream 872 2979396 ~ 2980334 (+) True G106243
TU120027 lncRNA downstream 9623 2988147 ~ 2989181 (+) True G106247
TU120032 lncRNA downstream 26540 3005064 ~ 3005325 (+) True G106252
TU120033 lncRNA downstream 27788 3006312 ~ 3127725 (+) False G106253
TU120046 lncRNA downstream 46609 3025133 ~ 3025905 (+) True G106260
XM_036961507.1 mRNA upstream 557615 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 800240 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 857781 2116553 ~ 2120455 (+) True LOC110516539
XM_036935173.1 mRNA upstream 1076788 1865365 ~ 1901448 (+) False LOC110511503
XR_005034604.1 mRNA downstream 262 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 289 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 305 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 1379 2979903 ~ 2980193 (+) True LOC118937337
XM_036935245.1 mRNA downstream 428663 3407187 ~ 3422099 (+) False mboat1
TU119854 other upstream 259711 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 450264 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1267679 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1277805 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1625373 1309278 ~ 1352863 (+) True tgfbr2b
TU120034 other downstream 228273 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 388681 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 388681 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 388681 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 660910 3639434 ~ 3800352 (+) True G106575

Expression Profile