RNA id: XR_005034605.1


Basic Information

Item Value
RNA id XR_005034605.1
length 472
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118937337
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2978786 ~ 2980193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctataggtcctgtcctgatctctatagcctctataggtcctgttctgatctctatagCCTCTATAGgtcctgttctgatctctatagtctctataggccctgttctgatctctatagCCTCTATAGGTCATGTCCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctatagtctctataggccctgttctgatctctataggtcatgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCATGTTCTGATCTCTATAGCCTCTATAGGTCCTGTCCTGATCTCTATAGGTCCTGTCCTGATCTCTATAGCCTCTATaggtcctgttctgatctctataggtcctgttctgatctctatagCCTCTATAGGTCCTGTCCTGATCTCTATAGcctctataggtcctgttctgatctctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120017 lncRNA upstream 7234 2970334 ~ 2971579 (+) False G106238
TU120016 lncRNA upstream 7234 2970853 ~ 2971579 (+) True G106238
TU120004 lncRNA upstream 29109 2947549 ~ 2949704 (+) True G106229
TU119998 lncRNA upstream 37260 2941146 ~ 2941553 (+) True G106224
TU119939 lncRNA upstream 105895 2872322 ~ 2872918 (+) True G106194
TU120027 lncRNA downstream 7954 2988147 ~ 2989181 (+) True G106247
TU120032 lncRNA downstream 24871 3005064 ~ 3005325 (+) True G106252
TU120033 lncRNA downstream 26119 3006312 ~ 3127725 (+) False G106253
TU120046 lncRNA downstream 44940 3025133 ~ 3025905 (+) True G106260
TU120049 lncRNA downstream 60063 3040256 ~ 3046547 (+) False G106263
XR_005034608.1 mRNA upstream 289 2978236 ~ 2978524 (+) True LOC118937340
XM_036961507.1 mRNA upstream 558192 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 800817 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 858358 2116553 ~ 2120455 (+) True LOC110516539
XM_036935186.1 mRNA upstream 1077365 1865365 ~ 1901448 (+) False LOC110511503
XM_036935245.1 mRNA downstream 426994 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 426997 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 1070590 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 1085799 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 1132929 4113122 ~ 4119742 (+) True LOC110507036
TU119854 other upstream 260288 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 450841 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1268256 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1278382 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1625950 1309278 ~ 1352863 (+) True tgfbr2b
TU120034 other downstream 226604 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 387012 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 387012 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 387012 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 659241 3639434 ~ 3800352 (+) True G106575

Expression Profile