RNA id: TU121537


Basic Information

Item Value
RNA id TU121537
length 2106
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC118937342
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3392063 ~ 3405112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTATATCTAAAGGTTAAGTATAAGGGAATCTAAGATGTGTGAAATGatatccagctcagggctccagcgtTTGGTTTGCTAACGTGCAAGCTAAGTAGCGAGATGTTAAGAACAAGCGTCTCTTGTTTACAACAGAGATATTCAACCCCCTCTTGGATTTAAGAGCCCTGTTGCCTAAGTTGTTTTGTGCCTCAAAAAATAGCGCCCCTTTTGGGTGTACAATCAGTATTACCGTATACCCTCTACAGATGTACCCTTTAGTCAGCGAGCAATGCTGTTGTAGATGGACCTTACGCTTGCTTACGGTGCTCATCTGAATATTTTAACACAGCCATCACCCCCCCATTTTAAAATCACAAGCTCATGAATGGGACATCTCCCTCTACTTAAAGGGAAATGTGTTTCTGACGGACATCAACATTTCTTTTTGTGTGGAGAAGAAAAGGAAGGAACTTTTCACCAAGCAgatcaagggtggctacttggttGATTTGGATGCCGAATGAACTCTTAAATGTGTTCAGTTGTATGTTCATTCGGCTaattgggtggggggggggggctagataTTGTTGGATCATTTTTGTCGATGTCACAGTGAAGTAGAGACAGGATAGTCTTAAGTTAGCCCTAGATGATAATTGAATGATATTGCCTTGCTGACTGGATGTTGGTAtaagctgggggggggggttggtgccCTGAAGTCTAGAAACCATCTTCTTTAAATGAAGGTATGATTCTGATCACTCACTAGGTACTGTAGACGACCTCTGGCTCTAGATGTTGTTTTATTACTATGCTAATGCTTGTTTATTTTTGGGGTGTTTTATGTTAGTCAGATAGGTGGCCATTTCAGTAGAGGTTCTGATTTCTAGAGCTGTAGTCATGGTGACAGACTGTTTGGCTTACCTCTTACCTGTATCTGAGTTCAGAGGTCTAGGATGGTTTGGTGGTGACTTGATGGTCAGGCACGTGGATGTGTTATGTTGATAGAATGATGCATATATGAATTAATATTCTGATATAATGGCTTGGTTTCCAttcgtgtgtttgtgttttagccagttaatttgtgtgtgtgtgtgtaaatggttTTTGCGTAGTGAGCGCGTTCCTTGGTGATAGTAATGAAACCGAACTCTTCAAGCGATGAGTTCATGTAACCAGGGTTGGGGATTCACTTACGTTATTGGTGTTTCTCatggaggagaatggaggaattTACTGAACTGAATAGTTAGGTAGTATTGTTGCCATCGTTGAATTATCCCATTTTTCCATACCTTTTGGGATTACAATTTTGCCAGTGTTCGCGTCTCTAATATGATTTTGCTTGTTATAAAGGTACtggaaaatgtagaaaaaaaatcccCCCCAagtgcacaaaacattttgtCAATACATTTCCTCTCTTGATCTTTaatttcatatttatatcaatGTGAATATGTATTTATAAACTCAACTTGAATTTGTTTTCTCTTATACTAATTAGATTTTCATTCTATATAAGAATTTATATAAAAAAAGGAATTCCCTACAATTTTATAGCCTGGTTGAACCAGATTGAAAGCTGCGTTGCATTCTCCACGTAGCATTCAAGTCGGGTTTAACCAGGCTAACCATTTTTTTATCTCATGTTGACCTGGAATCTGGTCACAAATTCCTCTCCGATGTTCAACCATTTTTGAAGTGATTAGGGAAGCCTGTCTttcccaatgtgtgtgtgtggatggatgctTATTATAAACACAAATaggatacgtcccaaatggcaacttaTGTAAGTggcactttagaccagagccctatgagccctagtacactagatagggaatagcaTGTCATTTGAGACGTAACCATGGAGATTACACACTGCTTATTCAAAGtttattttccatttgttttattttatatgAATGCATGAAAGAGTATGTTATGTGAATATTTTTGAAAATACAGATTTAATTTTCAGTTTTATTGTAACATGGCTTTTTAAAACATGTATGTTCTATTTGAAAGCTTTGATATAaattgtgtatatataaatatatatataatgcatCTGAACAGGACCATCTGTTGGGTTGGTGCCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121516 lncRNA downstream 26599 3363896 ~ 3365464 (-) True G107232
TU121515 lncRNA downstream 27322 3362792 ~ 3364741 (-) True G107231
TU121514 lncRNA downstream 28921 3359708 ~ 3363142 (-) True G107230
TU121512 lncRNA downstream 35041 3355884 ~ 3357022 (-) True G107228
TU121499 lncRNA downstream 64913 3326814 ~ 3327150 (-) True G107218
TU121586 lncRNA upstream 20112 3414342 ~ 3415480 (-) False G107261
TU121587 lncRNA upstream 20112 3414342 ~ 3415480 (-) True G107261
TU121501 lncRNA upstream 27653 3421883 ~ 3422664 (-) True G107219
TU121597 lncRNA upstream 37696 3431926 ~ 3433121 (-) True G107270
TU121609 lncRNA upstream 61193 3455423 ~ 3456292 (-) False G107282
XM_036935217.1 mRNA downstream 1051 2644890 ~ 3391012 (-) True cdkal1
XM_036935222.1 mRNA downstream 1318 2644890 ~ 3390745 (-) False cdkal1
XM_036961533.1 mRNA downstream 855901 2533802 ~ 2536162 (-) True LOC110511524
XM_036961522.1 mRNA downstream 873041 2518187 ~ 2519022 (-) True LOC110514306
XM_036961511.1 mRNA downstream 875644 2513710 ~ 2516419 (-) True LOC110512766
XM_036961539.1 mRNA upstream 46856 3441086 ~ 3443541 (-) True LOC118944031
XM_036935266.1 mRNA upstream 52927 3447157 ~ 3520769 (-) True LOC110514058
XM_036935302.1 mRNA upstream 133140 3527370 ~ 3663400 (-) False LOC110512975
XM_036935282.1 mRNA upstream 133140 3527370 ~ 3663402 (-) False LOC110512975
XM_036935295.1 mRNA upstream 133140 3527370 ~ 3663402 (-) False LOC110512975
TU119712 other downstream 906940 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 908707 2482941 ~ 2483356 (-) True G106001
TU119611 other downstream 1028532 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 1271562 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 1430476 1958484 ~ 1961587 (-) True G105492
TU121654 other upstream 358331 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other upstream 358331 3752561 ~ 3776178 (-) True LOC110506994
TU121876 other upstream 597096 3991326 ~ 3992847 (-) True G107456
TU122066 other upstream 901195 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 903215 4297445 ~ 4300230 (-) False G107576

Expression Profile