RNA id: XM_036935236.1


Basic Information

Item Value
RNA id XM_036935236.1
length 2492
RNA type mRNA
GC content 0.50
exon number 13
gene id mboat1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3350582 ~ 3487129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGTCACGTTCAGAAACTAGATCAGTAGGTGGGATAATGTAGAGTTATTAGAGGTGAGGGGGCCATCCCATCCGCCACCTACTGTTCCTGTTGCTCCTGCCTCAGTCCGTGATACAACTGACAGCTCTGTACCACGCCTTGGTAGGCTACTGGCTATATCAGCAGTCAGCACTAATTCTCGCATATTCGCCAACTGTCACAATAGCATATTGTTGTTAACTACGACTGCACAGAGAGGACGTCGAGTTTTTCTTGAGTCGGCATAAATGCTCGGGATGTATTTCAATCAATGAACAGCAATGAGATTGTAGAAGCGCTTTATTTATTTCTTTGGTAaaacctttctttctttctttctttctttttttacggAGGAGCGACTTCAAACCTTTACCATGCATAATGGACGAGTTGACAACCTCTTCGTTTAAAACCACCGGTTCCAAATGGTTGCTTCCAGTCAGCGATTTCTTTGGATTCCCATTGGATCAGGTGAACTTCTTGGCATGTCAGGTGTTTGCCCTTGGTGCATCCTTCTGGTTCCGTCTTTACCTCAGCCCTCAGTTTTCCAGCCCCGTGGTCCGACATGCCGTCGCCACACTCTTTGGCCTCTCCTTTGTCATATTCTGTTTCGGCTGGTATGCAGTCCATATCTCCGTCTTGGTGATGGTGTGCTACAGGATTCTGGTCACAGCTGACATCCACAACAttcacagGTATACTATGATCATGGCCGTCAGCTACCTCGCAGTGTGTCAGGTGAGCAGAGTCTTCATCTATAACTATGGGATCCTCTCAACAGACTTCTCTGGGCCGTTGATGATAATTACCCAGAAAACCACTATGTTAGCTTTTCAAGTGCATGATGGTATGTGTAAAAAGCGCGAGGACCTCACGGCCAATCAGAGGCTCCATGCTGTAGACTCCAAGCCGTCTCTGATAGAATACCTGAGCTACAACCTGAACTTCCTCAGTATCCTGGTGGGACCCTGCAGTCACTATAAGGACTACATAGACTTTATAGAGGGGAGACACGTTCAGAGGAGGCTGAGAAGGCTTTCAGCGTCCAACACTGGACAGAATGGATATGATAAAGTCTCAGAGCCCTCACCAATGGCTGCTGTCACACGTAAACTGCTGATCTGTGGTGTGTGCATGGTTTTGTTCCTGACCCTCACCAAAGCGTTCCCCGTCACATATAACGTTGACAGCCATTTCGTCAACGAGGCACCTTTCCTGACCAGACTGACGTATGCCTTCTTCTCTATACAAGCCGCCAGACCCAAGTTCTACTTCGCCTGGACTTTAGCGGATGCCATCAACAACGCAGCAGGTTATGGTTTTAAAGGTGTGGATGAAGCTGGACAGGTGTCCTGGGACCTCATCTCCAACATCAGTATCTGGGGGATTGAGACAGCAACTAGCTTCAAGAAGTTCATAGACAACTGGAATATTCAGACTGGTGTTTGGCTCAAAACtgTGTGTTACGACCGTGCTCCCCGTTACCCCACAGCTCTGACCTTCATCCTGTCAGCTCTATGGCATGGAGTTTACCCCGGATACTACTTCACCTTTATTACTGCTATCCCCATCACACTGGCAGCTAGAGCTGTCCGTAAGAACGTCCGGCAGTATTTCCTGTCCTCTCATCCTGTGAAGCTCGTCTATGACGTAGTGACCTGGGCAGCTACTCAGCTGTGTATCTGCTACACCGTCATGCCCTTCCTACTGCTGGCAGTAGAACCTACCATGCAGTACTACAGGTCAATGTACTTCCACATTCACATCATCAGTATTCTGACTGTGATTGTACTGAGCCAGAGCCACAAACcaagaggcagcagcagcagcagcagcaacggCACCAAGCCTGGACCGTACGATCCTCATCCCCAGGCCCAGCCTCAGCTCCAGCCCTACAACAACAACGTGAAAAGAAAGTGAAGTGTCCCTCTGTGTGAGGAGGCAGCCAGAGACCTGAATGGGCCCACTGGGTCAGACAAAGACGTCTCTGTGTGTCCACAACAAAGAGAGAGCTCAGCGGGGTGTAGGGGGGGCTGAGAGGGGCTCAGAGGGGCCGAGGGACTGTGCCTGCTGGCTGGTCGGCCTTGCCACCCTGTACATCCAACACTTCTACTGCCAGGCTCCTAAAAGGCCTCTCTCTGCCCTGCTTGCCAATTCTCTGTTCTTTCTTTccaagtgtgcacttgttcacttccctgcATGGATCTGAAAGGAAAGGACTGGCATACGATCTCCCTCTAGTCCAGCCCATAAACTCACCAATACAACACTTTTCATTCAATGTGTGGGAAGCTGTGCACAAGTGAGATAGTATACTTCAGGAGAAAGATCTGAGAACTGGGctcacagacagacggacggacggacggagacccagagacagacggacggacagacggacagagacccagagacagacggacagagacccagagacagacggacagagacccagagacagacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120368 lncRNA upstream 7339 3399428 ~ 3399851 (+) True G106454
TU120362 lncRNA upstream 12134 3392702 ~ 3395056 (+) True G106450
TU120351 lncRNA upstream 37098 3369635 ~ 3370092 (+) True G106439
TU120223 lncRNA upstream 122035 3284320 ~ 3285155 (+) True G106400
TU120210 lncRNA upstream 138312 3268632 ~ 3268878 (+) True G106388
TU120414 lncRNA downstream 7690 3429789 ~ 3431551 (+) True G106463
TU120416 lncRNA downstream 9865 3431964 ~ 3433787 (+) True G106465
TU120417 lncRNA downstream 13485 3435584 ~ 3436547 (+) True G106466
TU120410 lncRNA downstream 17709 3439808 ~ 3447539 (+) False G106461
TU120375 lncRNA downstream 20397 3442496 ~ 3447539 (+) False G106461
XR_005034604.1 mRNA upstream 426997 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 426997 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 426997 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 426997 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 428666 2978236 ~ 2978524 (+) True LOC118937340
XM_036935433.1 mRNA downstream 628684 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 643893 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 691023 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 814781 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 814785 4236884 ~ 4302536 (+) False deptor
TU120034 other upstream 16157 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 367715 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 688665 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 879218 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1696633 1708969 ~ 1710557 (+) True G105042
TU120569 other downstream 217335 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 254166 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 604976 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 715714 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 715714 4137813 ~ 4138496 (+) True G106814

Expression Profile