RNA id: TU120272


Basic Information

Item Value
RNA id TU120272
length 2597
lncRNA type read_through
GC content 0.48
exon number 6
gene id mboat1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3350582 ~ 3487129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacagacagacaggcagacagacaggtcctagaATTAGATGTGGCTGGCCCATTTCTTTTACATCTTACATCACTAGTTGTAGATATTATGTCAAACATGTTCATACCCTTAGGGGTTAGTGAGATATTAATGGTGTCTGTTTATTGTTGTATGAATACAGGAAACATTATCCCTcaggatggcaggtagcctcgaggttagtgttgggccagtaacagagaTGAAAAATCTgtcgctgtgcccttgagcaaggcactttaaacctaattgctccaggggctctgtacaatggtgaccctgaccgtgaccccactctctgcaggtgtctcagggggagttgggatatggtgatcctgaccgtgaccccactccctgcagGTGTCtcgggggagttgggatatggtgatcctgaccgtgaccccactccctgcagGTGTCTcggggggagttgggatatggtgaccctgaccgtgaccccactccctgcaggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcaggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcgggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcaggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcgggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcaggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcaggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcgggtgtctcagggggagttgggatatggtgaccctgaccgtgaccccactccctgcaggtgtctcagggggagttgggatatgcaagaaATACACTTGTGTGTGACAGCACAATCCTTTCGAAagattcgtcccaaatggcaccctattccctgtatagtccaGATGGGTTCTGGTCCAGATGGGTCCTGGTCCAGATGGGTTCTGGTCCAGATGGGTTCTGGTCCAGATGGGTTCTGGTCCAGATGGGCCCTGGTCCTGGTCTAGATGGGTTCTGGTCCAGATGGGCCCTGGTCCAGATGGGCCCTGGTCCTGATGGGTTCTGGTCCAGATGGGTTCTGGTCCAAAGCAGTGTAGTGTATAGAGAATAGGAGCTGTTTGATTCGGAACATAGTTATGAGGCTCTAGTTAGGAGCTGTTTGACTCGTTTTTAACAGTGGATGCTGTACATCAGGTCTCCTAATATTCATTTCATGTGTCTCTATGTATTTGAGAGGATGGACAAGTTTACTTTTATTTGGCAGGAAGTTGAGATTTCATTAATTTTGTCCGTTTAAATAAGAAAAGAAATGTAAATGTTGTATTAACTTTAAAGTCTCACAGTCTCAGATGAGGTGCAGGAAGCACCAATGACTTCTGAAGGAAAGTCTTTGGGTTctgtcccgaatggcaccctattgcctgtgtagtgcactacctttttaAACAGGGCCTTATGGGGGACGCAGACGTTGACTTTGTTTCAGGGGATGATGTGGAAGTCTTCTATGCCTCAGAAGAAGGTCCAAGATCTTCACACTACAAGATCTTCAACATTTCAAGTCCTGAAGCAGCTGAACCACTAATGATGCTAATATGAAGAGTGTCtggacactacacactacacgctacacacacacacacacacacacacacacaccacacacacacaccacacactacacacacacacactacacacacacacacacactacacacacaccacacactacacactacacacacacactacacacactacacacactacacactataattCTAGTCAGGACACCATAAACTGTTGAATAGTTGTTTTTTACCCAGACGGTTTGAATGTGTCTTCTTTTTAAAAATAATTCCACCAATCAAGTTATTAACCAATATTAAGAGCATAAAGAAATTACAAATGATCAATGTGTGCCTTTTAGCCTTTTGATTGTGTCTTGAATAATACCGTCAAATTGTATCGTCAGTAGCATAACGTTCACTATGGCGACACAATGGCAATAACATAAGTTGTATGTAACTACTATGAGCCCATATGATAGAGGAGATAGttactgatctgatctgatcaaTGGAGACAAGACGGCAACATACTGTACAAGATGTCCATCTTCAGATAACTATCTTCCTCAACCACAGAAAAGCTGGTTCAGTCTCATTCCAGGTGATCCGTCATCtctagaggcggcaggtagcctagtgattagagtggaggggcggcagggtagcctagtggttagagtggaggggcggcagggtagcctagagcattggactagtaaccggaaggttgcaagttcaaatccctgagctgacaaggtacaaatctgtggttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaataaaatggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120223 lncRNA upstream 82050 3284320 ~ 3285155 (+) True G106400
TU120210 lncRNA upstream 98327 3268632 ~ 3268878 (+) True G106388
TU120192 lncRNA upstream 120491 3246409 ~ 3246714 (+) True G106371
TU120187 lncRNA upstream 124274 3242357 ~ 3242931 (+) False G106368
TU120414 lncRNA downstream 3791 3429789 ~ 3431551 (+) True G106463
TU120416 lncRNA downstream 5966 3431964 ~ 3433787 (+) True G106465
TU120417 lncRNA downstream 9586 3435584 ~ 3436547 (+) True G106466
TU120410 lncRNA downstream 13810 3439808 ~ 3447539 (+) False G106461
TU120375 lncRNA downstream 16498 3442496 ~ 3447539 (+) False G106461
XR_005034604.1 mRNA upstream 387012 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 387012 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 387012 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 387012 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 388681 2978236 ~ 2978524 (+) True LOC118937340
XM_036935433.1 mRNA downstream 624785 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 639994 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 687124 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 810882 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 810886 4236884 ~ 4302536 (+) False deptor
TU120020 other upstream 327730 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 648680 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 839233 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1656648 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1666774 1699073 ~ 1700431 (+) True G105036
TU120569 other downstream 213436 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 250267 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 601077 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 711815 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 711815 4137813 ~ 4138496 (+) True G106814

Expression Profile