RNA id: TU121688


Basic Information

Item Value
RNA id TU121688
length 1763
lncRNA type read_through
GC content 0.54
exon number 3
gene id LOC118937345
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3615083 ~ 3619295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtctgtgtgtgtgtcgtgtgtctgtgtctgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtcgtgtgtgtgtgtctgtgtgtgtgtcgtgtgtctgtgtctgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaccacagcTTGGCTGCACTTTCAACACCGGCAGACCAACTGACTTCCTGGGGTTAGGGGTTATCTGTGGTGATCTAATCTGTTGACGTCCCTCATGCCTTGAGGGCCAGACCGGTTACCGGTAACACTTGGTCATCTGGTTCACGGTAGACCTACTCCACAGACATTACCTGAACCGTGGCTCCTGATCCActaagacagacagaggaggtctGTTATCTGGTTCACGGTAGACCTACTCCACAGACACTACCTGAACCGTGGCTCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGCTCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCCCTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGCTCCTGATCCCCTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCAATAACACAGACAGATGAGGTCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGCTCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCAATAACACAGACAGATGAGGTCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGCTCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCGCCTTGGGGACAGGGATCCTGATCCAATAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCAATAACACAGACAGATGAGGTCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCAATAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCACTAACACAGACAGATGAGGTCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCACTAACACAGACAGATGAGGTCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGATCCTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAGGGCTACTGATCCACTAACACAGACAGATGAGGCCTGTTATCTGGGCTGGTTGACCACCTTGGGGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121672 lncRNA downstream 22329 3591987 ~ 3593189 (-) True G107323
TU121660 lncRNA downstream 42888 3569469 ~ 3572630 (-) True G107316
TU121659 lncRNA downstream 48873 3566272 ~ 3566645 (-) True G107315
TU121575 lncRNA downstream 88715 3524614 ~ 3526803 (-) False G107254
TU121576 lncRNA downstream 88715 3524614 ~ 3526803 (-) True G107254
TU121730 lncRNA upstream 67327 3686622 ~ 3686950 (-) True G107342
TU121651 lncRNA upstream 85743 3705038 ~ 3706283 (-) False LOC110506994
TU121652 lncRNA upstream 85743 3705038 ~ 3706328 (-) False LOC110506994
TU121745 lncRNA upstream 109201 3728496 ~ 3730386 (-) True G107357
TU121749 lncRNA upstream 116984 3736279 ~ 3737983 (-) True G107359
XM_036935266.1 mRNA downstream 94749 3447157 ~ 3520769 (-) True LOC110514058
XM_036961539.1 mRNA downstream 171977 3441086 ~ 3443541 (-) True LOC118944031
XM_036935254.1 mRNA downstream 210406 3392646 ~ 3405112 (-) False LOC118937342
XM_036935217.1 mRNA downstream 224506 2644890 ~ 3391012 (-) True cdkal1
XM_036935222.1 mRNA downstream 224773 2644890 ~ 3390745 (-) False cdkal1
XR_005034618.1 mRNA upstream 16351 3635646 ~ 3637696 (-) True LOC118937344
XR_005034612.1 mRNA upstream 21999 3641294 ~ 3643287 (-) False LOC118937343
XR_005034615.1 mRNA upstream 21999 3641294 ~ 3643287 (-) False LOC118937343
XR_005034613.1 mRNA upstream 22397 3641692 ~ 3643287 (-) False LOC118937343
XR_005034614.1 mRNA upstream 22397 3641692 ~ 3643287 (-) False LOC118937343
TU119712 other downstream 1130395 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 1132162 2482941 ~ 2483356 (-) True G106001
TU119611 other downstream 1251987 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 1495017 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 1653931 1958484 ~ 1961587 (-) True G105492
TU121654 other upstream 133266 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other upstream 133266 3752561 ~ 3776178 (-) True LOC110506994
TU121876 other upstream 372031 3991326 ~ 3992847 (-) True G107456
TU122066 other upstream 676130 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 678150 4297445 ~ 4300230 (-) False G107576

Expression Profile