RNA id: XM_036935377.1


Basic Information

Item Value
RNA id XM_036935377.1
length 8068
RNA type mRNA
GC content 0.49
exon number 39
gene id LOC110506994
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3705036 ~ 3924570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGGGCGTCGCAGGAGAGGAGGGGCTGGCGCATCACGGTCTGTAACGTACTACGAGGGctctgtgtgagggtgtgtgattCTTCCGGTGGCGGTTCATTCTCGCGAGAAGCGGACAGGAAACGGAGGGATATGCGCCTAGGCAAATGTGGATACATCTTACCGAAAACGCGAGGGGAGGGAAACATGTAACCGGGCGTTCGGAGCGGCACCTGACACTTCGCGAGCAGGACTCTCGGTCTGTTGTATCCACCcgttattttattatttgaatTATTGACACACAGTATTTTTGTGTTTTCCGTTGGATATTATCGTCGAGCCAAGACTGCAAAAATGAGCGAGGAAGTATCAGAGGTCCCCAAAGAACTGCTGGagaGTGTGAAGGATGCAGTGGGGAGGAAGATGAAGCTCTCGGTGAAGAAGAGAGTCAAACTAGAGATCAAAGGAGACAAGGTGGAGAACAGAGTCTTGGCTCTCTCATCTCACCGGGCCTTCCTTCTGACTGCACGCATCCCTAGCAAGATTGAACACAACTTTAATTATCTGGAGATACAAGGGATCACCTGTAACAAGCCCACACAGTTGACGGTGGACTATGAGAGAGGTGTTGTGTCTCTGAAGCTGACCTCTACAGAAGAGGTGAATGAGGTGGTGGCTCACATTGGGATCTGTCTACAGAGGATATGTCCTGGTCTATCACCACTGAAGCTGATGAAGAAGCTGAGTATGGAGCCTCTGGAGAGGATCACCAGCCTACAGACTCTATGGGACAACCACAAAGTAGCAGAACCAGGACCGTGTGgtGGTTTCTCTCAGAGttacagatgtgtgtgtgactggctgGGTCTGCCCTACAGAGAGGAAGTTCAATGGGATGTAGACACCATCTATCTGACTCAAGACACACGGGATCTCAGCCTGCAGGACTTCAGTCATCTGGAGAATAGGGATCTAGTGGCTATAATAGCAGTGTTAGAGTACAACCAATGGTTCACAAAGCTCTCCACAAAGGATTGTAAACTGTCAGCAGACGTGTCTGACCAGATCCTTCGGGTGGTGGCCCGGTCCAGTCGACTAGAGGAACTGGTTCTGGACAACGCAGGACTCACGAGGGATTTTGCACAGAAGCTGGCGAATGCCCTCTCCCATAACCCCAACTCAGGACTCCACACTGTCAACCTTGCCAATAACCCACTGGAGGATCGAGGAATCACCTCCCTGGGAGCACAGTTCGCCAAACTCCCGAAGGGACTCAAGCATTTAAACTTTTCCAAAACCTCATTGTCACCCAAAGGGGTGAACAGCCTTGCCCAGTCACTGAGTGCCAACCAGTCCATCCCCAGCACGCTCAGTCACCTGGACCTCTCAGGGAACTTACTGCGGGCAGACGACATCCCGCATTTCTACCATTTCCTGGGCCAACCCAACAACCTGACGACTCTGGACCTGTCCAACACAGACTGCTCTCTGGACCTGGTGTGTTCTGCTCTCCTGAGGGGCTCCGTCCAGAACCTCTCTGTCCTCAACATGTCCAAGAGTGTATTTGCACATAGGAAAGGCAAAGATGTGCCTCCATCCTTCAAGCACTTCTTCAGCAGCGCCGTGGCCCTCAGCTGCATCAACCTTTCAGGAACCAAACTTCCTCCAGAGGCCTTGAAAGCTCTTCTGCTCGGTCTGGCCAGTAACCCCAACATCAAGGAAGTGTCGTTAGACCTCAGCTGCTGCGAGCTTGGTCACTGTCTCAGGTCTGGGGGGTCACAGATCCTGGAGGGATGCATCGCTGAGCTCCCCAACATCTCCAGTCTGGATATCTCTGACAACGGTCTGGACTCTGACCTGTCCACTCTGCTGGTGTGGCTGGCCAAGAACCGATCCATCCGACACCTCTCACTGGGGAAGAACTTCAACAACATCAAGTCCAAAAATCTGGCCCCTGTCCTGGACAATCTGGTTCATATGATTCAGGAAGAGGAATCGCCCCTGACGTCTCTGTCCCTGGCTGACTCTAAGCTGAAGACGGACCTGACCATTGTGCTGAATGCTCTGGGCAGCAACACCAGTCTGACCAGGGTGGATATCAGTGGGAACGCCATGGGGGACATGGGGGCTAAGATGCTGGCCAAGGCCCTGCAGATCAACAGCAAACTAAGgACGGTGATCTGGGATAAGAACAACATCAGTCCTCAAGGTCTTCAGGATGTAGCAGCTGCTCTGGAGAAAAACTTCACCATCCGGTTCATGCCTATCCCCATCATCGATGCGTCTCAGGCTCTTAAAGCCAGCCCAGAGAAGACTGAGGATGCCCTGCTCAAGATTGAGAACTACCTGTTCCGGAACCATGAGACTCGTCAATACCTCCAGGAGCAGGCCTACCGCCTCCAACAGGGCATCGTTACCACCACCACTCAGCAGatgATTGACAGGATCTGTGTGAAAGTCCAGGACCATCTCAACTCCCTGAGGAACTCAGAGACAGACGTGGTCTTAGACGACGTCAAGACGGCTGAAAACCTGATGAAGGATGCCAGGAACTCCAAAACGCTGCTTCCTAACCTGTACCACCTGGGAGCAGCGTCCAGAGAAGAGGTCAACGGTCAGTCAGTAGGACCCATCCAGGAGAAACTGGAGTCCATGGCAGGAGAGGTGGCCAGGGTCATGGATGAACAGCTACAGGGTCTGTTGGAGTCCATGGTGGATGCTGCGGAGGGTCTCTGTCCCCATGTGATGAGGAAGACTAACCTTCGTCAGGACCTGATCAAAGCCAGCACAGCTAAGATGGTGGTTCCCCGTAGCTTCGTCAAGAACACCCTGCTGGAACAGTCTGGAGTCGACATCATCAACAAGATCAGTGAGGTAAAGCTGAGCCTGGCTTCCTTCCTCTCAGACCGTATCGTAGATGAGATCCTAGAAGCCCTGTCTGGCTCTCAGCACACACTGGCTGACCACCTGGTGAGGAAGGAGCGTCCTCTGGTCCAGCGGGAGTCTGTGGACCTGGACGTACCCGAGGAGAGGGCTCCTAAACGGGCCACCACGGAGCTGAATGAGGCAGAAAGGCTGGAGGACCTGGAGACATGCatgATGACTCCCAAGTCCAAGAGGAAAAGCATCCACAGTAGAATGCTCCGTCCAGTTTCTCGTGCCTTCGAGATGGAGTTTGACCTTGACAAGGCCCTGGAAGATGTTCCCATCCACACAGAGGACCCTCCTGCACCTTCCCCTGCTCCTACCCTCTCGAGGTTAGAGAAGAGACCGTCAGGGGCCATGGGAGAACTGCCCTCAGACGAGGCCAAGAagctgcagcacttcaccaaacTACGGCCTCGCAGAAACAAGAAGATGCAGTCCAGTAAGATACCGCAGATCAGCAGCACCACGTCTCAGGACGGAGAGCAGAACGGTCTGCATGGAAGGGTTGATGAGGGGGTGGACGAGTTCTTCTCCAAGAAGGTCACCAAGATGGACTCCAAaCGTTCCCTAAAGAGTTCCGACTCCCAGGAcggggagaagaagaggagtaAAGGAGGTTTCCTCAACCTCATCAAGTCTCGCACCTCCAAGTCTTCAGACAAAGACAAGTCTTCAGACAAAGACAAGTCAGAGAAGAACCAGTCTACCCCAGCTCCAGCACTAACCCCAGCTCCAGTAACCTCTGTCCCCGAGGGGCCTTCCTCCCCTAAGGCCTCCCTGAAGAGCCAAGCTCCAGAACCACCAACCAAGGTCAAGGAGGCCAAGACCCAGCCCACTCATCCCAGCCAGCTCACCCAGCCCCTGGAGTGCAGCAGCAGCTCAGACCGGTCTGAGGAGCTACGGACCCCAGACTCCATGGATGAGGTGTCAGAGGGGGACAGTAAGGGTAGTCCCCAGGGGGGGAGGCGCTACGGGGTGCAGGTGATGGGGACTGGACTCCTGGCGGAGATGAAGGCCAAGCAGGAGAGACGGACCTTCGGATCACATAAGgaCCAGTATGACCAGTCGTCCAGTCCAGACAGCAGTGGCAGTGTGAAGGGCCAGCCTATCCCAACAGAGAGCAGGTCTCCAGGTGGCTCCAAGGcagagggggtggtggtggtcgGCTCCCCAGAGAAGAGCCCTCGTGGTGGGGAGGCCAAACCAGAGACGGTCCCTAGGAACCGCATTACCTCAGTCCTAAGTTCCAGTCCTAAGCCTCCTCTTCAGGGCCCCAAGCCAGCCCTCGCTGCCCGACCCTCCATCCTTCAGAAGCCGCGCACCAGCAGTAGCAGGAGCATAGATGAGGTCTGTGACTCTCCTGGAGGGAATGTGTCTCCCAAGGGGGCAATGCTGCCTTACAGCCTGAAGAGGGTCCCCTTGGACAAGGACAAGGAGGGGCAGGGCAGTCCTCTACTGGGGGGCACGGGGAGCAACAAAAACCCCTCTGCTCAGGCAGcaGTGAAACCAGACTCAGTGTCAGACCCTGCCAATCGCCAGAGCCCCCACCGCCACAACTCTGAGGACAACGGCTCCAAACCCAAGGACCAATCCCCCAACCCTGACAGAGACAAGGGACCGGGGAGAAAGTCTCCCCGATCTGGAGAAGAGGCCGACAAAGACTTTATTTTTATATGAGAAACTAAACTCTCAATGAATGACAGGTGCATTGTACCTGCCTGTCATCTCAGTATATCTGATGTCAGGAATCGGAAAGCGACGACCGTATGTCTCAAGACTGTCGGGCAGAGTAACCCATGTGAAGTGTTTCACTGTGATAGGACTGTTGTACACTTTCACTAAATCTCAGTAATTCCAAGATAAATATGGCTAAAGCACTGTTATGATGATGCACTGTTGTGTGTTAAGTCACTGTGGATCAGAAACAACACATTTTctgaagggggaaggagagggacatTCCTTTACACGACTCAGATATCTCATGGCTTGGCcatgtgtgtactatgtcatcatgGTTTGGAcatgtgtgtactatgtcatcatgGTTTGGAcatgtgtgtactatgtcatcatgGTTTGGAcatgtgtgtactatgtcatcatgGTTTGGAcatgtgtgtactatgtcatcatgGTTTGGACATGTGTGTACTATTCATCATGGTTTGGAcatgtgtgtactatgtcatcatgGCTTGGACATGTGTGTACTCTGTCATCATGGTTTGGACATGTGTGTACTCTGTCATCATAGCTTTGTGTGCCGGTCATCCCCTGTGCTTGTATTGGGAAATAAACTGGTGTACTGTCATGCCAGTAAAAGCTAGCCTGGAATCCACACTGAATATCTGTTTCACTATTCAGATTGGTATCCATGCCAGTAAAAGCTAGCCTGGAATCCACACTGAATATCTGTTTCACTATTCAGATTGGTATCCATGCTAAGTGAAATCCGGACATGGATGGGACTCCAGCTCGGGGCTTTTCTGCAGGCAGCATCAATTGGCTCCTAATTCAGAACCTGACTGCTTCGTGTGGACAGACGGACATTTTCAAACCTGTCCagcaattcaggaagtaaactgaaatacAATTTCAATTTCTCTTCATTGCTTTTCAATCAGAAATTTTTTAAATTGGAATTTGGCTTAGTTTCTggattgactggaattgaaatggaattgacccgaACCCTACTGTCTAGTCATTCAGGGCCCGACAACTAGGGGTCATGTCCTGACCTCGGCACCTTTCGGTCTTTCAATTGGTCTTCGTTTGCTGCCTCGCTGCCAGTAGTTTATTTTCTTCACGACCTGTAAATCATATGGCTTTGGACTGAAGGGTTGGCTTACTCGGTCAGAACGTAGTGGCTTCACGGTATCATATGGCTTTGGACTGAAGGGTTGGCTTACTCGGTCAGAACGTAGTGGCGTCACGGTATCATATGGCTTTGGACTGAAGGGTTGGCTTACTCGGTCAGAACGTAGTGGCGTCACGGTATCATATGGCTTTGGACTGAAGGGTTGGCTTACTCGGTCAGAACGTAGTGACATCACGGTAACATATGGCTTTGGACTGAAGGGTTGGCTTACTCGGTCAGAACATAGTGACATCACGGTATCATATGGCTTTGGACTGAAGGGTTGGCTTACTCGGTCAGAACGTAGTGGCGTCACGGTATCATATGGCTTTGGACTGAAGGGTTGGCTTACTCGGTCAGAACATAGTGACATCACGGTATCACGTGTTCCCGATGTCTGGGACTGGGTTGAATGCTGTGAACGCATCGCATTCCATGAACCTGTCCACCTGGGGCCTAGTTCAGTAGGCAGATAACGGAAcaaaactgactgaaacagggaggtcAAAtgacctgaacttgtccaataaagaAACACTTGTTTTAGTTTATTACGCTCTCTACTGAACAGGACCCTGAGGGGTGAACTACGAAGCAGGTAGCAAGGTCACTTCGGTAAACTACGAGTTCAACTCGGGATAACCGGTCATGCGAAAGCGTCTCACCTTTTTAGCAAAGGTCAATTTCTATGGCAACGAATCCTCCAGAACTAACCCGCTCCGGGGCAGGCTAACTCCACTTACCTAGAATTAAATGATCAATCaaatcagattccctccctctCGCAAAGACTGTGTCATCATCCCCTTCATTTGAGGAAGACgactgatttttttttgttttttttgtgtgtgttaaaaAGAGTCATGTTAAAAtatctaacatttcacatttagTAATGACGGAATGCATTCTAAACTTCACCCCCAGTAGCTCTTCTGTATGACTCCATAATACTATTTTATTGataggagggtggggggggggggggggcctgtgGTTGttgtgcattgataagcacaccaaaTACGGCACTAATGATAAGTAATAAAAATAAAGACTAATTAATGATAAATAATAAAATTAAAAAACGCGTTAATGATGAGTGATAAAATAAAGGCACTTCTAAAATCCCATTTCACACCACAACCTGCTGAGTTTCCAAAATAACTTTTCTTTTCTCTTGATTTCTGCACAAATGAAAATGTTGCACTGAGTCGCCCACGGATTGGCGTTTCAGCATTGTCGCGATGAAGAGTTCGCCGTTCGACTAGCCACGTGCGACATGCACGCGCAAGCAGTTCACAAGCCTTCTAGAGTTAGCGGCAGGCGTACAAGCAATATCCACCGGCGTTAGGTACACATGACGCCTGAACTGGGATGTGAAGCTAGCTGCAGCTGGTTAGCTTTAGAAAGACCCTGAGTAGATCTAGCATGCTTCGTAGGATAACCCCTCTGGTTAATTGTCTCGGTTGGTTTGGATTTCTCCGGCTTGTATTTTATTCTTTCTGTTTGGGGATAAAGAGCAGCTGGCTGTCTTATGTTTGGTTCTATTAAACAATAAAACCACGGAACGACGTGTTTAAAAGAATCCTTCAGAGTTAAATAAGTAAGAGAGGGAGTCTATCTCTCAGGCAGGGTGATTACTGCTGAATTTGTGTGTCCGATATGCATATGTGGTGTGCTGTAtgtgtaatataatactgtatgttaaaTTACATacatgtaatataatactgtatgtttaatTACATACATttaatataatactgtatgtttaatTACATacatgtaatataatactgtatgttaagTTACATACATGTAATATATCCACACACGTATGTGTACACAGATcctatattactatggtactaCTAAGCACACTACTAAAATAGGTTTAAATAATGATGTAATTTATTGAAATAAAAACAATGTTTGATGATGTTTTTCTCCCTCTTCTTGTCCTTAATGTACGTTGTGTTAATACTGAGGAAATCAATTTGTCCATTTCACTGTTTTCTTCTTATTCTTTAAACGATGAATTagttgtattattttattttcatgacaaGACACATTGCTATATTTGCCTGATCGTAtctgaaaagcattttttttaaaaaggaaaGTTAATCCAACAAAGAAAATGACTCCATGTTTGTTAGTCGgtgtgttttattttgttatggACGATACTCCATTAACATGGTTCACTAAATCCCACTACTGGCTGTGGACATGTCCTTCCTTATGTGAATATTTATACCAAATAAAATAATTGTACAGATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121730 lncRNA downstream 18086 3686622 ~ 3686950 (-) True G107342
TU121688 lncRNA downstream 85741 3615518 ~ 3619295 (-) True LOC118937345
TU121672 lncRNA downstream 111847 3591987 ~ 3593189 (-) True G107323
TU121660 lncRNA downstream 132406 3569469 ~ 3572630 (-) True G107316
TU121659 lncRNA downstream 138391 3566272 ~ 3566645 (-) True G107315
TU121853 lncRNA upstream 18008 3942578 ~ 3943271 (-) True G107435
TU121883 lncRNA upstream 87506 4012076 ~ 4012535 (-) True G107463
TU121893 lncRNA upstream 95779 4020349 ~ 4023024 (-) True G107468
TU121896 lncRNA upstream 108825 4033395 ~ 4033771 (-) True G107471
TU121897 lncRNA upstream 109330 4033900 ~ 4034286 (-) True G107472
XM_036935357.1 mRNA downstream 4022 3676265 ~ 3701014 (-) False LOC110505062
XM_036935358.1 mRNA downstream 4034 3683634 ~ 3701002 (-) False LOC110505062
XM_036935364.1 mRNA downstream 4034 3683769 ~ 3701002 (-) True LOC110505062
XR_005034615.1 mRNA downstream 61749 3641294 ~ 3643287 (-) False LOC118937343
XM_021585577.2 mRNA upstream 6064 3930634 ~ 3933620 (-) True LOC110506163
XM_036935421.1 mRNA upstream 15820 3940390 ~ 3987636 (-) True LOC110520706
XM_036935449.1 mRNA upstream 197740 4122310 ~ 4167024 (-) False enpp2
XM_036935456.1 mRNA upstream 197742 4122312 ~ 4167024 (-) True enpp2
XM_036935463.1 mRNA upstream 246173 4170743 ~ 4223193 (-) False taf2
TU119712 other downstream 1219913 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 1221680 2482941 ~ 2483356 (-) True G106001
TU119611 other downstream 1341505 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 1584535 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 1743449 1958484 ~ 1961587 (-) True G105492
TU121876 other upstream 66756 3991326 ~ 3992847 (-) True G107456
TU122066 other upstream 370855 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 372875 4297445 ~ 4300230 (-) False G107576
TU122340 other upstream 451352 4375922 ~ 4376423 (-) True G107755
TU122474 other upstream 614665 4539235 ~ 4539623 (-) True G107843

Expression Profile