RNA id: XM_036935411.1


Basic Information

Item Value
RNA id XM_036935411.1
length 4737
RNA type mRNA
GC content 0.54
exon number 39
gene id LOC110506994
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3705036 ~ 3924570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGGTCTGTAACGTACTACGAGGGctctgtgtgagggtgtgtgattCTTCCGGTGGCGGTTCATTCTCGCGAGGTGAGCCCTGATGGTGTCATCTACTAGACGTTAATCAGCGGATTCTCTGAGGAAATACgttatttttaaatgtatgatTTTCCTATCCTGAGTTTTAGAAGCGGACAGGAAACGGAGGGATATGCGCCTAGGCAAATGTGGATACATCTTACCGAAAACGCGAGGGGAGGGAAACATGTAACCGGGCGTTCGGAGCGGCACCTGACACTTCGCGAGCAGGACTCTCGGTCTGTTGTATCCACCcgttattttattatttgaatTATTGACACACAGTATTTTTGTGTTTTCCGTTGGATATTATCGTCGAGCCAAGACTGCAAAAATGAGCGAGGAAGTATCAGAGGTCCCCAAAGAACTGCTGGagaGTGTGAAGGATGCAGTGGGGAGGAAGATGAAGCTCTCGGTGAAGAAGAGAGTCAAACTAGAGATCAAAGGAGACAAGGTGGAGAACAGAGTCTTGGCTCTCTCATCTCACCGGGCCTTCCTTCTGACTGCACGCATCCCTAGCAAGATTGAACACAACTTTAATTATCTGGAGATACAAGGGATCACCTGTAACAAGCCCACACAGTTGACGGTGGACTATGAGAGAGGTGTTGTGTCTCTGAAGCTGACCTCTACAGAAGAGGTGAATGAGGTGGTGGCTCACATTGGGATCTGTCTACAGAGGATATGTCCTGGTCTATCACCACTGAAGCTGATGAAGAAGCTGAGTATGGAGCCTCTGGAGAGGATCACCAGCCTACAGACTCTATGGGACAACCACAAAGTAGCAGAACCAGGACCGTGTGgtGGTTTCTCTCAGAGttacagatgtgtgtgtgactggctgGGTCTGCCCTACAGAGAGGAAGTTCAATGGGATGTAGACACCATCTATCTGACTCAAGACACACGGGATCTCAGCCTGCAGGACTTCAGTCATCTGGAGAATAGGGATCTAGTGGCTATAATAGCAGTGTTAGAGTACAACCAATGGTTCACAAAGCTCTCCACAAAGGATTGTAAACTGTCAGCAGACGTGTCTGACCAGATCCTTCGGGTGGTGGCCCGGTCCAGTCGACTAGAGGAACTGGTTCTGGACAACGCAGGACTCACGAGGGATTTTGCACAGAAGCTGGCGAATGCCCTCTCCCATAACCCCAACTCAGGACTCCACACTGTCAACCTTGCCAATAACCCACTGGAGGATCGAGGAATCACCTCCCTGGGAGCACAGTTCGCCAAACTCCCGAAGGGACTCAAGCATTTAAACTTTTCCAAAACCTCATTGTCACCCAAAGGGGTGAACAGCCTTGCCCAGTCACTGAGTGCCAACCAGTCCATCCCCAGCACGCTCAGTCACCTGGACCTCTCAGGGAACTTACTGCGGGCAGACGACATCCCGCATTTCTACCATTTCCTGGGCCAACCCAACAACCTGACGACTCTGGACCTGTCCAACACAGACTGCTCTCTGGACCTGGTGTGTTCTGCTCTCCTGAGGGGCTCCGTCCAGAACCTCTCTGTCCTCAACATGTCCAAGAGTGTATTTGCACATAGGAAAGGCAAAGATGTGCCTCCATCCTTCAAGCACTTCTTCAGCAGCGCCGTGGCCCTCAGCTGCATCAACCTTTCAGGAACCAAACTTCCTCCAGAGGCCTTGAAAGCTCTTCTGCTCGGTCTGGCCAGTAACCCCAACATCAAGGAAGTGTCGTTAGACCTCAGCTGCTGCGAGCTTGGTCACTGTCTCAGGTCTGGGGGGTCACAGATCCTGGAGGGATGCATCGCTGAGCTCCCCAACATCTCCAGTCTGGATATCTCTGACAACGGTCTGGACTCTGACCTGTCCACTCTGCTGGTGTGGCTGGCCAAGAACCGATCCATCCGACACCTCTCACTGGGGAAGAACTTCAACAACATCAAGTCCAAAAATCTGGCCCCTGTCCTGGACAATCTGGTTCATATGATTCAGGAAGAGGAATCGCCCCTGACGTCTCTGTCCCTGGCTGACTCTAAGCTGAAGACGGACCTGACCATTGTGCTGAATGCTCTGGGCAGCAACACCAGTCTGACCAGGGTGGATATCAGTGGGAACGCCATGGGGGACATGGGGGCTAAGATGCTGGCCAAGGCCCTGCAGATCAACAGCAAACTAAGgACGGTGATCTGGGATAAGAACAACATCAGTCCTCAAGGTCTTCAGGATGTAGCAGCTGCTCTGGAGAAAAACTTCACCATCCGGTTCATGCCTATCCCCATCATCGATGCGTCTCAGGCTCTTAAAGCCAGCCCAGAGAAGACTGAGGATGCCCTGCTCAAGATTGAGAACTACCTGTTCCGGAACCATGAGACTCGTCAATACCTCCAGGAGCAGGCCTACCGCCTCCAACAGGGCATCGTTACCACCACCACTCAGCAGatgATTGACAGGATCTGTGTGAAAGTCCAGGACCATCTCAACTCCCTGAGGAACTCAGAGACAGACGTGGTCTTAGACGACGTCAAGACGGCTGAAAACCTGATGAAGGATGCCAGGAACTCCAAAACGCTGCTTCCTAACCTGTACCACCTGGGAGCAGCGTCCAGAGAAGAGGTCAACGGTCAGTCAGTAGGACCCATCCAGGAGAAACTGGAGTCCATGGCAGGAGAGGTGGCCAGGGTCATGGATGAACAGCTACAGGGTCTGTTGGAGTCCATGGTGGATGCTGCGGAGGGTCTCTGTCCCCATGTGATGAGGAAGACTAACCTTCGTCAGGACCTGATCAAAGCCAGCACAGCTAAGATGGTGGTTCCCCGTAGCTTCGTCAAGAACACCCTGCTGGAACAGTCTGGAGTCGACATCATCAACAAGATCAGTGAGGTAAAGCTGAGCCTGGCTTCCTTCCTCTCAGACCGTATCGTAGATGAGATCCTAGAAGCCCTGTCTGGCTCTCAGCACACACTGGCTGACCACCTGGTGAGGAAGGAGCGTCCTCTGGTCCAGCGGGAGTCTGTGGACCTGGACGTACCCGAGGAGAGGGCTCCTAAACGGGCCACCACGGAGCTGAATGAGGCAGAAAGGCTGGAGGACCTGGAGACATGCatgATGACTCCCAAGTCCAAGAGGAAAAGCATCCACAGTAGAATGCTCCGTCCAGTTTCTCGTGCCTTCGAGATGGAGTTTGACCTTGACAAGGCCCTGGAAGATGTTCCCATCCACACAGAGGACCCTCCTGCACCTTCCCCTGCTCCTACCCTCTCGAGGTTAGAGAAGAGACCGTCAGGGGCCATGGGAGAACTGCCCTCAGACGAGGCCAAGAagctgcagcacttcaccaaacTACGGCCTCGCAGAAACAAGAAGATGCAGTCCAGTAAGATACCGCAGATCAGCAGCACCACGTCTCAGGACGGAGAGCAGAACGGTCTGCATGGAAGGGTTGATGAGGGGGTGGACGAGTTCTTCTCCAAGAAGGTCACCAAGATGGACTCCAAaCGTTCCCTAAAGAGTTCCGACTCCCAGGAcggggagaagaagaggagtaAAGGAGGTTTCCTCAACCTCATCAAGTCTCGCACCTCCAAGTCTTCAGACAAAGACAAGTCTTCAGACAAAGACAAGTCAGAGAAGAACCAGTCTACCCCAGCTCCAGCACTAACCCCAGCTCCAGTAACCTCTGTCCCCGAGGGGCCTTCCTCCCCTAAGGCCTCCCTGAAGAGCCAAGCTCCAGAACCACCAACCAAGGTCAAGGAGGCCAAGACCCAGCCCACTCATCCCAGCCAGCTCACCCAGCCCCTGGAGTGCAGCAGCAGCTCAGACCGGTCTGAGGAGCTACGGACCCCAGACTCCATGGATGAGGTGTCAGAGGGGGACAGTAAGGGTAGTCCCCAGGGGGGGAGGCGCTACGGGGTGCAGGTGATGGGGACTGGACTCCTGGCGGAGATGAAGGCCAAGCAGGAGAGACGGACCTTCGGATCACATAAGgaCCAGTATGACCAGTCGTCCAGTCCAGACAGCAGTGGCAGTGTGAAGGGCCAGCCTATCCCAACAGAGAGCAGGTCTCCAGGTGGCTCCAAGGcagagggggtggtggtggtcgGCTCCCCAGAGAAGAGCCCTCGTGGTGGGGAGGCCAAACCAGAGACGGTCCCTAGGAACCGCATTACCTCAGTCCTAAGTTCCAGTCCTAAGCCTCCTCTTCAGGGCCCCAAGCCAGCCCTCGCTGCCCGACCCTCCATCCTTCAGAAGCCGCGCACCAGCAGTAGCAGGAGCATAGATGAGGTCTGTGACTCTCCTGGAGGGAATGTGTCTCCCAAGGGGGCAATGCTGCCTTACAGCCTGAAGAGGGTCCCCTTGGACAAGGACAAGGAGGGGCAGGGCAGTCCTCTACTGGGGGGCACGGGGAGCAACAAAAACCCCTCTGCTCAGGCAGTGAATGTTCCAACAGAAGACGGTAGCGTGTTTGATTCTGATCAGGAAGCTGACAAGCCAATCTCAGAGCCCGACACGCCTGCCAATCACCTACCAGCACCGAACAGGAAGTGGGCGAGCACAAGAGCAGGAAGTCCCTCCCCTGTACTGTGAAACCAGACTCAGTGTCAGACCCTGCCAATCGCCAGAGCCCCCACCGCCACAACTCTGAGGACAACGGCTCCAAACCCAAGGACCAATCCCCCAACCCTGACAGAGACAAGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121652 lncRNA downstream 2249 3705038 ~ 3706328 (-) False LOC110506994
TU121651 lncRNA downstream 2294 3705038 ~ 3706283 (-) False LOC110506994
TU121730 lncRNA downstream 21627 3686622 ~ 3686950 (-) True G107342
TU121688 lncRNA downstream 89282 3615518 ~ 3619295 (-) True LOC118937345
TU121672 lncRNA downstream 115388 3591987 ~ 3593189 (-) True G107323
TU121853 lncRNA upstream 18042 3942578 ~ 3943271 (-) True G107435
TU121883 lncRNA upstream 87540 4012076 ~ 4012535 (-) True G107463
TU121893 lncRNA upstream 95813 4020349 ~ 4023024 (-) True G107468
TU121896 lncRNA upstream 108859 4033395 ~ 4033771 (-) True G107471
TU121897 lncRNA upstream 109364 4033900 ~ 4034286 (-) True G107472
XM_036935357.1 mRNA downstream 7563 3676265 ~ 3701014 (-) False LOC110505062
XM_036935358.1 mRNA downstream 7575 3683634 ~ 3701002 (-) False LOC110505062
XM_036935364.1 mRNA downstream 7575 3683769 ~ 3701002 (-) True LOC110505062
XR_005034615.1 mRNA downstream 65290 3641294 ~ 3643287 (-) False LOC118937343
XM_021585577.2 mRNA upstream 6098 3930634 ~ 3933620 (-) True LOC110506163
XM_036935421.1 mRNA upstream 15854 3940390 ~ 3987636 (-) True LOC110520706
XM_036935449.1 mRNA upstream 197774 4122310 ~ 4167024 (-) False enpp2
XM_036935456.1 mRNA upstream 197776 4122312 ~ 4167024 (-) True enpp2
XM_036935463.1 mRNA upstream 246207 4170743 ~ 4223193 (-) False taf2
TU119712 other downstream 1223454 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 1225221 2482941 ~ 2483356 (-) True G106001
TU119611 other downstream 1345046 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 1588076 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 1746990 1958484 ~ 1961587 (-) True G105492
TU121876 other upstream 66790 3991326 ~ 3992847 (-) True G107456
TU122066 other upstream 370889 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 372909 4297445 ~ 4300230 (-) False G107576
TU122340 other upstream 451386 4375922 ~ 4376423 (-) True G107755
TU122474 other upstream 614699 4539235 ~ 4539623 (-) True G107843

Expression Profile