RNA id: XM_036935472.1


Basic Information

Item Value
RNA id XM_036935472.1
length 1341
RNA type mRNA
GC content 0.48
exon number 9
gene id dscc1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4227282 ~ 4236792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAATGGAATGTGATGGTCAAGGGCCACCCACCTACTACCTCTATAGGAGAAGGGTTGTCCAGCCCTGGCGAAAACAACTCATCCAGCTGTTGCCACTTTCTCTACACATCAACGTTAAAAACAGTCTGTTTAACATTGACGAGTAGAGAGACTGTTTTAACGTTGAGTCTCTCTACACGTCAACAATCtccacaatctctctctcctttatccttgTTCTCTACATGCAGCCTGGTTATCAGAGGAGACCAGGATGAGAGAGCTGTCCTGTGCAGTGAAGACAAGACTTATGACCTGAAGATAGCCGACACCTCAAACCTCCTGCTGTTAGTGCCTGGCTGCCTGACTCCAGATCATCTGACTACTGACAACCAGGCCAGCTCTCAGCTGGTCCATGCACAGATCTGGGGCTTTTCTAACAGTTACTGGGAGCTGAGAAAGCGCCATCCCAAACTAAAGAAGCTGAAGAGACTTCTGATGGAGAATCCGTACGAGGGCCCAGGTATCAGTGGGCAGGAGGATGTCACAGAGGGGAAGTACACTATGGGAGACCTGCTTGAAAGAATCCAAGCAAGTGAGGAGGAACTGGAGGCCCAACTACAGACTATTCATGCCTGTGAGGTCAACGGCTACTGGAGGCTGTTGGATTTTGACTATGAGATGAAGCTACTGGGTCACATCACTCAGCTGGTGGACTCTGAGTCCTGGTCCTTCAGTAAAGTCCCTCTTCGTGTCAGTCTGGAGGAGTTAGGATGTCTGGAGCCACAGGAGATGATAGAGCATAGCTTGAACTGTTATGGAAGGCGCTACACGGACAACGATGAGGTGTTCTTTGCGCTGAACGAGGACAAGGTGTGCAGAGCCACAGCTCAGATGCTGCTGCAGAACGCAGCCAAGTTCAACCTGGCAGAGTTCCAGGAGGTGTGGCAGCAAAGTGTCCCAGACGGGATGggcactagactggaccagctGAAGAGTCTAGCCCTTGTGGACCGCAGCTCCAAACCAGAGACCATATCTCTGCTGAGAGTGGAAGATCTTCCCGAGGACACACTGGAGAGATTCACCCACCTCTTCACCATGAGACAGAAGTGGACCGAGGAGGACATCACCCCTTACATACAGGACTTGTGTGGAGAAAAGCAAACAACTGGAGCTCTTCTTACCAAGTACGCTCGTTTGTCCACGCAAAACGGAATAAAAGTCTTCAATTCAAGAAGGCTAGTGGCAACATGAAGACGATTGGATATCTTAATTGACGAGCAAAGTTGTTTGGAATCAGTGTATTGTTGTATTTGTTCAAATGTTGTAATAAAAATCTAATGTTTTTGTAATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122011 lncRNA downstream 1109 4225950 ~ 4226173 (-) True G107540
TU122010 lncRNA downstream 1992 4224818 ~ 4225290 (-) True G107539
TU121992 lncRNA downstream 3217 4223798 ~ 4224065 (-) True G107525
TU122000 lncRNA downstream 24172 4202715 ~ 4203110 (-) True G107532
TU121993 lncRNA downstream 42296 4184480 ~ 4184986 (-) True G107526
TU122004 lncRNA upstream 1725 4237575 ~ 4238071 (-) False G107534
TU122005 lncRNA upstream 1725 4237575 ~ 4238059 (-) True G107534
TU122013 lncRNA upstream 3752 4239602 ~ 4240251 (-) True G107542
TU122014 lncRNA upstream 6204 4242054 ~ 4242734 (-) True G107543
TU122017 lncRNA upstream 9247 4245097 ~ 4245307 (-) True G107546
XM_036935468.1 mRNA downstream 4078 4172703 ~ 4223204 (-) True taf2
XM_036935463.1 mRNA downstream 4089 4170743 ~ 4223193 (-) False taf2
XM_036935449.1 mRNA downstream 60258 4122310 ~ 4167024 (-) False enpp2
XM_036935456.1 mRNA downstream 60258 4122312 ~ 4167024 (-) True enpp2
XM_036935421.1 mRNA downstream 239646 3940390 ~ 3987636 (-) True LOC110520706
XM_036935578.1 mRNA upstream 339587 4575437 ~ 4602797 (-) False mrpl13
XM_036935588.1 mRNA upstream 351181 4587031 ~ 4602716 (-) True mrpl13
XM_036935603.1 mRNA upstream 426483 4662333 ~ 4740091 (-) False sntb1
XM_036935620.1 mRNA upstream 426665 4662515 ~ 4740068 (-) False sntb1
XM_036935598.1 mRNA upstream 426665 4662515 ~ 4740076 (-) False sntb1
TU121876 other downstream 234435 3991326 ~ 3992847 (-) True G107456
TU121654 other downstream 451104 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other downstream 451104 3752561 ~ 3776178 (-) True LOC110506994
TU119712 other downstream 1742159 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 1743926 2482941 ~ 2483356 (-) True G106001
TU122066 other upstream 59575 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 61595 4297445 ~ 4300230 (-) False G107576
TU122340 other upstream 140072 4375922 ~ 4376423 (-) True G107755
TU122474 other upstream 303385 4539235 ~ 4539623 (-) True G107843
TU122481 other upstream 314463 4550313 ~ 4551965 (-) True G107849

Expression Profile