RNA id: XM_036935578.1



Basic Information


Item Value
RNA id XM_036935578.1
length 895
RNA type mRNA
GC content 0.47
exon number 7
gene id mrpl13
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4575437 ~ 4602797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCCCTAAAATATACAAAATATCATCGGTTACATATTATTCACCGAAAATGTACTAGTTATCCATTCAGGATTTCAAGAACAGATTTACAATTTGGACACAGGAACGGAGTTCTTTTATCCATGTTTCGACTCAATACAACGCTGCACCATCTGCTCACATTGGGGGTCAATCTGGAATGATGTGCTCGTAATTCAAGTACTATGTCCAGTTTTACCAAATCTGCCCAGCAATGGGCTACATTTGCCAGGTCGTGGTACCTGATAGACGCTCGAATGCAGCCTCCAGGGAAGATTGCCACTATGTGTGCAATCAGGCTACAGGGGAAACACAAACCTATCTACCATGCACTGAGTGATGTTGGAGACCATGTAGTAGTCATGAACAGCAGACACATAGCCTTCTCTGGGAACAAATGGGAGCAGAAGATGTACTCCTCTCACACCCAGTACCCGGGTGGATTTAAACAAGTCACAGCCACCCAGCTACATTTGAAAGACCCCAAAGCGATAGTGAAGCTGGCAGTGTACGGGATGCTGCCTAGGAACCTCTCCAGAAGGACCATGATGCAACGGCTACACCTCTTCCCTGAAGATGATCTTCCTGAGGACATCCTTCTAAACCTGACGGAGGAGCTGCCTCAGCCCAGAGAGATCCCTCGCAGGCTGAATGAGTACAGCCAGGAGGAGCGAGAAGCCTTCCCCACTCTGTGGACCCCACCTGAAGACTACAGGATGAAGTGATCCATCAGAAGGCTGTTGCTAGgcgccttcttcttcttctgtcctGTTACTTGTACTGGCATTTACATCCTGGTGACATTTACTGTACACACCACAAACCTTTTTCTGTCGTCCCAAATAATGTACAAAAATAAAACTAGTTCTCTTGTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122459 lncRNA downstream 3129 4568710 ~ 4572308 (-) False G107837
TU122460 lncRNA downstream 3129 4568710 ~ 4572308 (-) False G107837
TU122462 lncRNA downstream 3129 4568710 ~ 4572308 (-) False G107837
TU122463 lncRNA downstream 3129 4568710 ~ 4572308 (-) False G107837
TU122465 lncRNA downstream 3129 4568710 ~ 4572308 (-) True G107837
TU122511 lncRNA upstream 10061 4612858 ~ 4615672 (-) False G107873
TU122513 lncRNA upstream 10061 4612858 ~ 4614515 (-) True G107873
TU122521 lncRNA upstream 19947 4622744 ~ 4623624 (-) True G107878
TU122530 lncRNA upstream 31764 4634561 ~ 4636111 (-) True G107885
TU122552 lncRNA upstream 40495 4643292 ~ 4644087 (-) True G107889
XM_036935477.1 mRNA downstream 338645 4227282 ~ 4236792 (-) False dscc1
XM_036935472.1 mRNA downstream 339587 4227282 ~ 4235850 (-) False dscc1
XM_036935468.1 mRNA downstream 352233 4172703 ~ 4223204 (-) True taf2
XM_036935463.1 mRNA downstream 352244 4170743 ~ 4223193 (-) False taf2
XM_036935449.1 mRNA downstream 408413 4122310 ~ 4167024 (-) False enpp2
XM_036935603.1 mRNA upstream 59536 4662333 ~ 4740091 (-) False sntb1
XM_036935620.1 mRNA upstream 59718 4662515 ~ 4740068 (-) False sntb1
XM_036935598.1 mRNA upstream 59718 4662515 ~ 4740076 (-) False sntb1
XM_036935614.1 mRNA upstream 65354 4668151 ~ 4740098 (-) False sntb1
XM_036935624.1 mRNA upstream 65357 4668154 ~ 4740093 (-) True sntb1
TU122481 other downstream 23472 4550313 ~ 4551965 (-) True G107849
TU122474 other downstream 35814 4539235 ~ 4539623 (-) True G107843
TU122340 other downstream 199014 4375922 ~ 4376423 (-) True G107755
TU122094 other downstream 275207 4297445 ~ 4300230 (-) False G107576
TU122066 other downstream 278622 4295425 ~ 4296815 (-) True G107574
TU122777 other upstream 240264 4843061 ~ 4844091 (-) True G108033
TU123301 other upstream 637821 5240618 ~ 5241664 (-) True G108477
TU124209 other upstream 819700 5422497 ~ 5430757 (-) True LOC110520858
TU124444 other upstream 1234880 5837677 ~ 5840273 (-) True G109302
TU124426 other upstream 1258772 5861569 ~ 5862730 (-) True atxn1b

Expression Profile