RNA id: XM_036935553.1


Basic Information

Item Value
RNA id XM_036935553.1
length 2656
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110520696
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4602958 ~ 4654733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagagagagagagagagagagagcgcgcggaAATGAATTTGATAATACGAAAAAAAGTCTACACAACTTTTTATTTACATTTATACTGAACACTGATGGTAGAGTATTCAGAGGAATGGATCGGTACGTGCTAGTTGTTTCTTTTAACCAAGAAGAGGATAAATGCGCGAAGGCATTGGAGGCTGCCAAACAGATCTATGATCAACTGGGGAGCATCGCCAGTTGTAATTCAAAACGGAGGGTTTCTCTGTTTCCAGCCTGCTCTCTGAGTGGTGGTCCAGCCTCACAGAGGTGGTATTTTGCTGTCCAGACATGCCATGGGACATCTCAGTTCTGCAGTACAGAGTGGGAGGAGCTGGGTAGTTGTCAGAAGAACGATGAGCAGGAGGAGAGCCCCAGCACtatagaggcctgtctcagtgctCTGGATGAGCAGGAGGAGAAGACTGACCAGCCTGACCCACAGCAGACACAGTTGTATGAAGAGGCAGCAGAGGGATTACACCTGTTATCAGACAAGCTTCCCCCTCCAGGAAAAGCACTGTTAGATGTGATATTTCTGGGTTTTGCTGAAGAAGCTCCTAAGCTGAAGGACTTCCTCCCTGTGATTGGCTCGTTGAAACACATGCAGACAtggcacacagccaagatgacCATAGTGACTGAACACCAAGCTGGGTGGCAGAAGCCAGCCTCTAACCTGTCAGCCAGAGTAGTACATCCCAGTAGCATCATGACCTGTATTGATGAGAGGGAGTTATGGAGAGGAGGTGTTCTCATCAGAGAGAAAAAGTTTGCCTCTGAGGTGAGGTTTGAAGGCTTCTCCCTCCGAGCCCAGGATAGAGAGACATGGTACAGCCTGCTGCCTTCTGATCCAGGATCCCATAACAACTCTGACCACAAGCTACACTCAGAGACCAACTCTGACCACAATCTACAGTCGGAGgTGTTCCATTACTTCCGGTCTGTTCTAGACCTGGTTCAGTTGGTGACGGTGTCAGATATTCCCAGCTTCCTCCGCTCCAGCACAGAGTTTCACCTAGAACTATCCTCCAAATCACTGAGAGATAAACGGCTCCTTGATCAGTTCAGATCACTGTCTGGAAAGGTAGGGGCACTGTTCTCTCTATCCTGTACGGTCAGCTCCATGGCTCTACCCCCTGCCTCTCAGCTCAGCTCCCAGAAGTGGAAGGACTTCATGTCTAAGAGACCCAAGACCCTGCCTGTTCCATATGTGGAGGTGAAGGGTGAGAGCGGACACTACTTCCTGTTGGTCCAGGGGTCAGAGGGCGGAGGCTGCAAGGCCCGCCTGATACACTCAGCCAATCAGATCAATGGAGCCGCTGCCATGGCAACCGTCAATGGGCTTCTGAAAGAGAATTCTGTGTCGTCTTCAGGTTCCACCACTACAGACTGGCTGcgctccctgccctgtctccatGGAGACCAGCTgctacagagggagaggaagttggCCGAGGTGCAGACTCTGGTCCTAAAGGAGTGCCTGAGACGTAGAGAAGAGGCAGAGAAGCCAGCTTCAATACCAGTCAATGACCTGAAGATCTTGCTCAGCCTGGCCAGAGAACAGTACCTCAAGATGCATGACTCTACCCTGCCTAAAGCCTCTACCCTGCTTAAAGACTCCAGTCTGCCCCGAGTTGAGCCCTGTGGAGCAGAGGAGGTGAACCTCACTACGAAGACTACAGAGTTCATTAAACACTCCCAACATGCTGATTGGCCAGAGAGAAGTGTTCTGCACAACTATGAGAACCTCCAGAGGACTCGTCAGAAGCTGAGGTTTGGTCTGCTGTCTGGCAGCTCATCTGACTGTCTGCTGGGGCCTAAAGACGTCCAGGGCCAGAGAACCACCTCAGCCTTGCTGGATGCCAAAGAGCTGCTTAGACACTTCACACCAGACGGCCTGCCCACCGGAGAACTGCAGCCTCTATTAGTCCAGAGACTAGGgGGAAATACATTCCAGATGTCTCCAGACTTGACCCCCAGGAAAGTGACCCAGATCCCCTTCAGCCAAGCAGCCAGCTCCCACTACCATGGACTAGAGTTCTGTCTGGACGAGCAGGGCCACAAGGCCTTGGACCGGGACCAGGGCTTCGTCCGGCTGCAGTCTCGTCTGATTCGCTACGAGACCCAGACCACCTGCTCCAAGGAACCTTGTCCCGTCCCCTTCGCCTTAAGCCCCGCCCCCTCGCCGGCCGTGCTGTCTGAACCAGGAAGTGTCCCGGACGGAGAGGCCCTCCTCAACTCTGACCTGCCCAGGATCAAGAGACGATCCTGGGATACAGACGCCACCCACCCCCATAAGAGGCTGGCCAAGTCGGAGAGCAGTGATTCCCTGGGCACTGTGTGTGtttaactgtctgtgtgtgtctaactgtctgtgtgtctgtgttgttcaGGCTGGCCAAGTCGGAGAGCAGTGATTCCCTGGGCACTGTGTGTGtttaactgtctgtgtgtgtctaactgtctgtgtgtctgtgttgttcaGGCTGGCCAAGTCGGAGAGCAGTGATTCCCTGGGCACTGTGTGTGtttaactgtctgtgtgtgtctaactgtctgtgtgtctgtgttgttcaGGCTGGCCAAGTCGGAGAGCAGTGAGTCCCtgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122264 lncRNA upstream 3445 4596186 ~ 4599513 (+) True G107697
TU122260 lncRNA upstream 21281 4581316 ~ 4581677 (+) True G107693
TU122246 lncRNA upstream 61680 4540537 ~ 4541278 (+) True G107682
TU122247 lncRNA upstream 62658 4539636 ~ 4540300 (+) False G107682
TU122243 lncRNA upstream 75884 4526567 ~ 4527074 (+) True G107680
TU122583 lncRNA downstream 14003 4662524 ~ 4668610 (+) False G107896
TU122584 lncRNA downstream 14003 4662524 ~ 4668610 (+) True G107896
TU122586 lncRNA downstream 57678 4706199 ~ 4707474 (+) True G107898
TU122607 lncRNA downstream 61568 4710089 ~ 4710939 (+) True G107911
TU122611 lncRNA downstream 63023 4711544 ~ 4722290 (+) True G107912
XM_036935508.1 mRNA upstream 30577 4327990 ~ 4572381 (+) False col14a1a
XM_036935511.1 mRNA upstream 30577 4327990 ~ 4572381 (+) True col14a1a
XM_036935515.1 mRNA upstream 31955 4327986 ~ 4571003 (+) False col14a1a
XM_036935520.1 mRNA upstream 33306 4327987 ~ 4569652 (+) False col14a1a
XM_036935521.1 mRNA upstream 64901 4327983 ~ 4538057 (+) False col14a1a
XR_005034649.1 mRNA downstream 87136 4735657 ~ 4737279 (+) False LOC118937361
XR_005034652.1 mRNA downstream 87136 4735657 ~ 4737279 (+) False LOC118937361
XR_005034651.1 mRNA downstream 87136 4735657 ~ 4737280 (+) False LOC118937361
XR_005034655.1 mRNA downstream 87136 4735657 ~ 4737281 (+) False LOC118937361
XR_005034653.1 mRNA downstream 87136 4735657 ~ 4737282 (+) False LOC118937361
TU120937 other upstream 464462 4137813 ~ 4138496 (+) False G106814
TU120940 other upstream 464462 4137813 ~ 4138496 (+) True G106814
TU120871 other upstream 575364 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 802606 3639434 ~ 3800352 (+) True G106575
TU122634 other downstream 95647 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 160218 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 209390 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 487835 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 647658 5296179 ~ 5299933 (+) True G108354

Expression Profile