RNA id: XR_005034658.1


Basic Information

Item Value
RNA id XR_005034658.1
length 4038
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110506140
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5148101 ~ 5176987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACGTACGCTGACGTAGTTGATCACGTGGTTTTTGGCGTAGATCCCCCTGCGAACGCCGATTTTTTCCGGCTGTTGTCTGGCGGATTCGGTCGAATCTGTAGAATAAATCGTCGTATTCGGTTGTTATCGTGTTGTAAGACCCGTTTTGGACCCCGTTTAACGGTGCTCGGCATTACAGCGCATCATACGCGGTAGACAGattGGGTGATCTGGGATGAAGTCTCATGAATTCCCTCATTGGAGCTGACATTAACAGTCAGCAGGAACAAGTGCATATTCTTCACAAGACAGAAACATCCCATCGTTTCCCCTCTACAACGTCCGTCTAACAGTCCCAGGGGACGTACGCACGCCATGGCCAGCCGGAGGAAGACCACGACCCCTTGTAGAGCTGATGCTGTTTTTCGAGGTGATGACATGATGGGGCAAGAGGATCCAGGTGAGATGGAGGTGGAGGTATCGGCGAATGACAAAAGCACAGTGGTGAATGGATCCACAGAGATGCTTCCTGGAGAGGACTGGAGCTCCGGGACAGAGCCTAGTGGTTCACGTCAGGAGTCGCTGGCCCCTCAGAAACCTAATGCGGTGGATTCAAGGCCTCAGAGGAAGCAGCAGGGAGGCTATGAATGCAAGTACTGTCCGTTCTCTACCCAGAACCTGAATGAGTTCAAGGAACACGTGGACTCCAATCACCCCAATGTCATTCTCAACCCGCTCTACCTGTGTGCTGTGTGCAACTTCAACACAAAGAAGTTTGACACCTTGACAGAGCACAACGAGAGGTGTCATCCGGGGGAGAGCAACTTCAAGTTCAAGAGAATCAAGCTGAACAATCAGACCATCCTAGAGCAGTCGATAGAAGGAGCGAGCAACGCTGTGGTCTGTGATTCAACCAACGGCATTCAGACAGGAGAAGACTTCGCCACTTTCCCCCTGAGCAAATCCACCACAGTGAAGATTAGTAAGCCAAAAACAGACAACAAACGGTTATTCACAGAAAGTCAACCGGACAGACTCGACCACGAGCTCCCCAGAAAGCAGATCGCCGCCGTGAATGTGACCGGGACCGTGATCATCCCAGAAGCGTCCCTAAAAGATGGCGTCTCTCATATCATGCCTTCTCTTCAGCGCCCGCCTAACTACAACTTAGTACCAAAAATCGCTGTCCCTTTGAACACCTCCAAGTACAACCCTTCACTGGACAGTAACATGACACTCATCACATCCTTCACCAAGTTCCCGTACCCGACCCAGGCGGAGCTGTCCTGGCTTACCGTTGCCTCCAAGCACCCCGAGGAACAGATCAAGGTGTGGTTCACCCTCCAGAGACTGAAGCAAGGCATCAGCTGGTCCCCTGAAGAGGTGGAAGAAGCTCGGAAGAAGATGTTCAACGGCACCATCCAGTCGGTCCCACAGACCACCTTCACCGTGCTGAGCGGCGCCCAGATGGCTCAGTCCACcaaaggacaacagtctctagtTCAATCCGTCCCCTTCAACCTCCTGGGACAGACCAGTTATGTGTTGACGCCGGTTGCGAACGGCTCAGCTGTCAGTTGTTCTCCCATCACACTAACCATGGCAAACCAGGTCGTGCAGTCAGTCAAGCGACCCTTGGTAGCTCCAGTAGTGGCCGCTTCAGAGATCAAACGTCCCTCCATAATCCAGACGATTCAGGCACCTACATCTAGACTGGTGGCTTCGCCTAAACCTAGCTTCACTTCAGACGCTAATAAAACCCCGGACCAGATTGCTGTACTGAAAGCGAGTTACACCCAGTGCCAGTTCCCTGAAGAGGAGGAAGTGTACCGCCTCATTGAGTCCACCGGCCTCTCTAGAGGAGAAATCAAGAAGTGGTTCAGTGAGCAACGACTCCTCAATCACAAGGTGGCGCCACAGGTGATCAAGATTGAGCCCCAGGCATTGAAAGACAGTCAGCCCAAAAAGGCTGTGCCCACCCAGTTTCCTCTCCTGGAGAGGCTCAAAGGCAAATCCTCTGAGCAGCTCAAGATGCTAGAGGAGAGTTTTCAGAGGACCAGCTCCCCCACTGAAATTGACATTGACAACCTCGTTGTGGACACAAGGCTCTCCAAGACTGAGATCGACTGCTGGTTCTCAGAGCGCAGAGCACTGCGGGACAACTTGGAGCAAGCCCTGGCAAACTCCATGTGTCCGAAGAGCCTTGAGGAGCAACGAGGGATACTGAACAGTGTTTACGAACAGGACAGCAAAGTCCGGTGCTCACCTCTTCCCATCGTCACCACTTCCACCAGTCCTGAGCCCATCGACAGGAAATCCCTAGGGCTTCTCAAAGAGGTGTTCACCCAGACCCAGTGGCCGTCGCCAGAAGAGTACAGCCAGCTGGAGGGACAGACAGGTTTGTCTCGCACAGAGATTGTCCGCTGGTTCAAGGAAAACCGATCCGCCCTGAAGAACGGAACCTTGGACTGGATGGAACAGTTCCAGAAAGTCAACGGCAAAGCAGGACAGAACGGTCAGAGCTCGTCAGGCATCACCGAACGACCCCCAAGCAGCATTCTCCAGCAGCACTTCACGGAAGCCAAGACCACGCTGCTTTCAGCAGAGGACGCAGAGAAGCTTCCTTTGCAGTCGAAACTCATCAACCAGGACATAGTCCAGTGGTTTACCAGTAAGCTGGGCCAGAGTATGACAGACATCAGCAGGGGCAGGGACCAACATGGACAGGCCAACGTGGACAGAAGCAGATGGGTGAAGGTGACCATGGCTGTAGGGGACGAGACTAAAGGTGCTTTGGAGAACCAGAAGATCGGCTCGGAAGCAGAGGTGCTGATGGGAGACCAACCTGGTCGGGTGACTGGATGAGAAGAGCATGAGCGATGGCTAGCAACAATCTAGCAGCTGTGGCTTTGAACCACGCGGGATGCCTGTAATTTAGCCTTCAGAAAAACATCTTGGCAGGAAGAGGCTATTGAGATTATACACATGTGGTTATCACTGGGGATTTTCCCCCCCTGGTGAACAGAAAAGCACCTCTGATAGCCTGCTGTATGGAGGATACTGAGTTTCTCAGGCAGAAGATTCTCAAGATTGTTGAATTCTGGAACCAATGATTTCCTACCTGGCCTGTGACATCAGCACAGTGGACAGTAGAGTCCACGCCAAACACCGACTGGCAAAGACCATTGAGTGCCAAAGCTGGACTtgatgcattattattattattattattattattattattatcattacacttaataaataaaaaaagggcCCTTGTAAATATTTTTCTGTATTGCAAAAGCTTTGTAAACATTTTGGGGGTTGCTGGTTTTTACATTTCTAACAGGAGTCAATAACCCCTAAAAGAGGAATGTTTTGGTTTTTAATGACTGTGATGGAAATTGTAAACCAATTCATCAGTTGGTAATTCTTTTCTTTTTAACAAAACATTTAGTGACCGACAGCTGGTCATAGATGGCACTTATTTCAAGTGGATAGACTAGTAACACTTCTGATCTGATAACCAGTGTGTTCATCCATTTGGACTAAAGGGACTAGTGGTTCTCTACCAGACCATAGAATCACCTAGCCTGGGTTCCAGGAGTGGAATGATGGCACAAAACAGGTCTGCTACCCAGGCTAAGAATCACATACTTACATTACAATAACAGTTCTCCCTTCAGCATTCATGCTGAATGCTCCTGCTGCCTGAGACGACAGTCAGCCACAGAATGGacattaatacattttttaaaaacaagaaaatgcactgtacatgttttTTGTAGTTCAGTCTCATTTTTGAATTGCAGCGTCCGTTGCATCAGTGACTGGTCTTTTCTCGTGTTGGCTTTCTAGATATCCATAGATATCCTAGGTGTAGTTAGGCTCCATTTTTCAATGGCTCGCTCCTTCAGTTTCATGCTGCTTCTATTAGTGAATCATGTTCACACATGTATCTGGAATACTGTACTGCTACCAAGAATCTCTTTACTTCCtggtttgttttttatttatccgtCTGCTGTAACTCAATAAAACACAACCAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123046 lncRNA upstream 9743 5137664 ~ 5138358 (+) True G108281
TU123025 lncRNA upstream 49215 5097542 ~ 5098886 (+) False G108262
TU123026 lncRNA upstream 49581 5097542 ~ 5098520 (+) True G108262
TU123024 lncRNA upstream 51006 5096781 ~ 5097095 (+) True G108261
TU123001 lncRNA upstream 66467 5079374 ~ 5081634 (+) True G108241
TU123015 lncRNA downstream 14590 5191577 ~ 5192957 (+) True G108252
TU123107 lncRNA downstream 29578 5206565 ~ 5207066 (+) True G108323
TU123110 lncRNA downstream 32793 5209780 ~ 5210360 (+) True G108326
TU123114 lncRNA downstream 44881 5221868 ~ 5222697 (+) True G108330
TU123115 lncRNA downstream 46620 5223607 ~ 5224256 (+) False G108331
XR_005034656.1 mRNA upstream 410817 4735657 ~ 4737284 (+) False LOC118937361
XR_005034650.1 mRNA upstream 410818 4735657 ~ 4737283 (+) False LOC118937361
XR_005034653.1 mRNA upstream 410819 4735657 ~ 4737282 (+) False LOC118937361
XR_005034654.1 mRNA upstream 410819 4735657 ~ 4737282 (+) False LOC118937361
XR_005034655.1 mRNA upstream 410820 4735657 ~ 4737281 (+) False LOC118937361
XM_036935664.1 mRNA downstream 18944 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA downstream 18952 5195939 ~ 5227041 (+) True tbc1d31
XM_036935668.1 mRNA downstream 51070 5228057 ~ 5235894 (+) True LOC110520809
XM_021587149.2 mRNA downstream 97169 5274156 ~ 5275584 (+) True mrpl32
XR_005034673.1 mRNA downstream 106707 5283694 ~ 5285741 (+) False LOC118937366
TU123045 other upstream 11109 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 289827 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 336526 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 402515 4744168 ~ 4745586 (+) True G107922
TU120937 other upstream 1009605 4137813 ~ 4138496 (+) False G106814
TU123151 other downstream 119192 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 329559 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 404306 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 542978 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 542978 5719965 ~ 5725382 (+) True G108682

Expression Profile