RNA id: XM_036935658.1


Basic Information

Item Value
RNA id XM_036935658.1
length 3761
RNA type mRNA
GC content 0.52
exon number 23
gene id tbc1d31
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5195931 ~ 5227041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggttgacatgtctgctaaTGCCTGaccgtaccataaccccaccatggggcactctgttcacaacgttgacatcggcaaaccgctcgcccacacgacgtcaTACACGCTCTCTGCCATCTgtccagtacagttgaaaccgggattcatccatcgAAGTATCATGGTCACAGTGATTCGCAGTGCAGCTgcctaccagtccaaaacagtcCGCTTCCTTCATGTCACCTTCGACACTACAGGGGACTCTTTCCTGGCTGGAGATCACCATGGGAATATTTATGTCTTAGACATCACCAGAAACAGgtttagaCTTGTTCAGAAAACCGGTCAAGCATGCACTGCCTTGGCCTTCAACTTGCGCAGAACAACAGAATTCTTGGTTGCTCTTGCAGACTACTCCATCAAGTGCTTTGACAAAGATACGAAGCAGCTGGTGAGCTGGATGCGGGGTCACGAGGGGGCGGTATCCTCCGTGTCGGTCCATGGCTCTGGCCGCTACGCCATCAGTACATCAGCTGACACGGCTCAGCTCTGGGACCTGGACACCTTCCAGAGGAAGAGGAAACTCAATGTCCGCCAATCTGTCGGCATACAGAGGGTGTTCTTTCTTCCTCTGGGGAACACCATCCTCAGCTGTTTCAACGATGACTCCATCTTTGCCTGGGAGAGTGACACGTTGTTCTGCAAATACCAGCTGCCTGTTCCTGATGAGGGACCCAGGATACACTACAAGGCATTTGCTGtcacacgTGATGGGAAGATTCTGGCTGCAGGGGGCAGATCCAACCTTCTCCATCTGTGGTGTCTGGACACCAGGCAGCTGCTTAGAGTGGTCCAGATGCCTCCCAAGGTCCGCACTGTCAGACAGCTGGAGTTCCTACCAGACAGCTTCGATGGTGGGGCCAGCCAGACTCTTGGGGTGCTGAGTCAGGATGGTGTGATGCGTTTCATCAACATCCAGACCTGCAAGCTGCTCTTCAACATCGGATCCCATGATGACGCCATCACCTCAGCCACCGTCAGTCCCAACGGACGCCATATTGTCACGATAATGGACAACGGCAGCCTAAACATCTACAGTGTTCAGTGTCTGACCCAGGACTACAACAAGCCTCCTCCGTCCCTGGTCAAAGTGGTGTCTGGTGGAGAGTGTTCCGCTCTGACAATGAAGGTGAAGTCAGAAGGGGTCCAGCGGCCGGCCAAAAACTCTGGTCGACGGGTCAAGACCAAAGTCCTGAGGCCTCCAGCTGTCCCCATGACAGAGGATAAagagAATGAACTGCCTGACGGTCTAAACAAGAAGAGACTTGTGACGTTACTGAAGGCATTTGGAGAATATCCAGCTAAATACAGGATGTTTGTGTGGAGGTCCCTCCTGCGTCTGCCAGAGAACCACGCAGCTTTCAGCAGTCTGACCGATAAAGGCCTGCACTCTGCCTACCTCAGCATCCAGGAGCGATACCCCATCAAGAGCCAGAAACTGCAGCGTGGACTTCAACGAGTGTTGTCTGCACTAGCCCACTGGGCGGCCATCTTTGGAGAGACAGACTACCTCCCTCTGATGGCATTTCCCTTCGTCAAGCTCTTCCAGAATAACCCACTGCTCTGTTTTGAAGTGGTCGCCACCACTATAGTGAACTGGTGCCAGCACTGGTTTGAATacttccccaaccctcctctcaaCGTACTGAGCATGGCAGAGAATGTTCTGGCTCACCATGACAAGGAACTGCTGCAGCACCTCATCGACTGTGGAGTCACCTCTCAGctgtATGTGTGGCCCCTGTTAGAGACTCTGTTCTCTGAGGTGCTGACCAGAGATGAGTGGCTCAAACTGTTTGACAACGTCTTCTCTAACCATCCCGCCTTCTTATTGGTATCTGTGGTCTCATATGTCACCTGCTGCCGTGCCCCACTACTGCTCTGCAGCCACAAAGAGGACTTTGAGTATTTCTTCCACCACCGTAACAACCTGGACATCAGCTCCGTGATAAAGGAGACGTACAGGCTGATGGAGAGCACCCCAGCAGACATCCACCCCAGGAACATGCTGGATGACTTTCAGCCTCTGACCAGGGGACAGTACCCGGTCTTCAACAAGTACCCCACCTACATAGTGGAGTACCagtcacaggagagagagaggatacgcCAACAGGAAGTGGACTACCTCAGAGAGAGgcAGGCGGTGCAGGAGCTGCGTGCGAAGGCGGTTCAGAGGCAGGCTGAGGACGAGGCATGGTACACCCAGCAGGAGATACTGCAGCAGGCTGAGGAGAAACGCAGGGACATCCTACAGCAAGAGGAGAGCAAGCTGGCTGAACAGAGAACCAGGTTAACAGCCATGAAGCGTGAGTTGAAGGTGAAGGAGCTCCAGCTGATGGATGCTGCCAGGAGACGCTTCCTAAAACAGCAGCAGGACCAGAGACTGACTGAACTACACAGACTGGATGAGCAGATACAGAGGAAGATGAACACCAGAGACCAGGAGACGGCAGCAGCAGTACAGGACATACAAGTCAGACAGATGGAGCTGGAAGCACAGAGACGCCTGTTTGAACAGCAACTGGCCAAGGAGCAGGTGCGTGTGACTCAGGAGGTCAGAGCAGAGGTGGATACCAGGAGACACAGGTCAGAGGTCGAGGAGACCACCTTCCAACACCTCCTTAACAACGACACTGACGTCAGCCTGGGAACCAAGAAGgTTCTAGAGGAGTGTTTAGCTGAAGCAGGCCAGCTGGGAGTGGACACCGAGTGGCAGGCTGAGGTGATGAGGCGTCTAGACCAGGAGGATGCAGCCCGGGACAGACACTACCACCATCTGGCTGGACTACACAGAGAGACCCTCACCAAGGAGCAGCAGCTAGTTAACATCATGGAGGACGTAGAGGGACAGAGGTGGGAGGAGGTGGTGTCTCAGAAGGCCCAGCTAGAGGAGCAGAGGCAGGCTGCAGCCACAGCCGAGGCCAACAGGAGAGTCTTCCTCagccaggaggaagaggagaacgaGCAGCACAGAGACAACCTCCGCAGGAGCCAGGACCACTCACTCAGTCAACAGTGGGAGATGAGAGCCAGGTCTCCATGCTCCACTAGTGGCCTGCTTCACAATCCTGTTGCTTCTCCTGGTCCTCATCAGTCTCAACAACGTCACAGTCCCAACAACATCTGTCTAAACAACCAGTCCACCTCAGACTCCTCCACTTGCTTCTCTCTGGACCGGGGTCGAGGGGAGCtggactgcagagagagggagttgatGCAGAACATCAGAGAGCTACGGCAGAAACTGGCGGCCCGCGCCAAAAACTCCAACGTCTCCCAGTAACCACgacgacacacaaacacacccgcTGTGCCTTTTTGTTTTGCATATCTAGACTTGAAAAGGAAACTGAAATGGTTTGTGGTTTTCTGTCCGTTTTGAAAGAAGATGCTGATATTATTTGCCTTAACAAACAGCTGTCCTCTaaccacaaccctggtgttgactAGTTAAAGAGGGATTAAATGAAAGCATTCCATGGTCTTAATGAGATTTGTAGCACAACCCTCTCCTGTGTATATTTAGTTATTTAAGTTGTTTTTAAATATTGTTGTATCAACTCGAGTCATTTTATCTCTGCCTTGTTGACTAGTTTCAGTCTTTGCCAGACTATACTCACCAGGCGTGCTCTGGTCTGATGGTGACTTATGACTTGCTTACCTCAGCATAGGTATCCAGGTAATTCACCTTTTAATAAAGCCttagcaaatcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123015 lncRNA upstream 2982 5191577 ~ 5192957 (+) True G108252
TU123074 lncRNA upstream 24284 5167395 ~ 5171655 (+) False G108300
TU123073 lncRNA upstream 24284 5170196 ~ 5171655 (+) True G108300
TU123046 lncRNA upstream 57581 5137664 ~ 5138358 (+) True G108281
TU123026 lncRNA upstream 97419 5097542 ~ 5098520 (+) True G108262
TU123127 lncRNA downstream 11186 5238227 ~ 5240350 (+) True G108334
TU123129 lncRNA downstream 13570 5240611 ~ 5241683 (+) True G108336
TU123125 lncRNA downstream 22672 5249713 ~ 5254032 (+) True G108333
TU123089 lncRNA downstream 56587 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA downstream 57966 5285007 ~ 5285729 (+) True LOC118937366
XR_005034658.1 mRNA upstream 18952 5148101 ~ 5176987 (+) False LOC110506140
XM_036935645.1 mRNA upstream 18952 5148106 ~ 5176987 (+) True LOC110506140
XR_005034656.1 mRNA upstream 458655 4735657 ~ 4737284 (+) False LOC118937361
XR_005034650.1 mRNA upstream 458656 4735657 ~ 4737283 (+) False LOC118937361
XR_005034654.1 mRNA upstream 458657 4735657 ~ 4737282 (+) False LOC118937361
XM_036935668.1 mRNA downstream 1016 5228057 ~ 5235894 (+) True LOC110520809
XM_021587149.2 mRNA downstream 47115 5274156 ~ 5275584 (+) True mrpl32
XR_005034673.1 mRNA downstream 56653 5283694 ~ 5285741 (+) False LOC118937366
XM_021595380.2 mRNA downstream 79235 5306276 ~ 5310035 (+) True ccdc127a
XM_036935725.1 mRNA downstream 94513 5321554 ~ 5349672 (+) False phf20l1
TU123045 other upstream 58947 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 337665 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 384364 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 450353 4744168 ~ 4745586 (+) True G107922
TU120940 other upstream 1057443 4137813 ~ 4138496 (+) True G106814
TU123151 other downstream 69138 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 279505 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 354252 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 492924 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 492924 5719965 ~ 5725382 (+) True G108682

Expression Profile