RNA id: XR_005034673.1


Basic Information

Item Value
RNA id XR_005034673.1
length 1913
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118937366
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5283628 ~ 5285741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCGCTCTCTGTACTTTATATCTGCTGGATTTTTTTGTGTTCTGTGGGTTCCTGCCGGTGCTAGACTAGTTGGTGGTGTTCTCTGGTTTATTACTTACCTATGTCGACTGTGCTGGTTGGCTAGCTAGGCTAGTTATCTGGCTAGGCTAGATAGACTAACTAACTCCAGCTGGCTTAAGTTAACTGCATTTACCAGTAACATTATTTAATAACTGGTTAGAGGGTGTTATGTATTTCCAAAACTTTGGTTTACTTTAATATAGCTGTAAGCTAGGTGTTGATAGCAACTGGCTGACTCATGCAATGCTAACGTAACATTAGCAGGCTGGTAGGGATAATGTTAGCAGGCTAGTTGGCTTGCAACCTCGTAAGCTGATTTGTAACAAATTCATAAAGTATTTGCTTGTAAAtgggcagatttttttattttattgaaaccAGTAGTTGTGAGTTGGAGTAacattatagggaataggctggcttGCTGGGTCCTCCATATTACATCACACCCCGTAAAAGCATTTCCCGGCATGACTTGGCATTTGACTGAATTCTAATCTATTTTATGTAATAACTCGTAAAATGGGAAAGAGAGGTGTAACTTTGCATTGGGACTTTTCATGCGTATACTAATGCaaatctgtcacaccctgatctgtttcacctgtcttgtgcttgtctccacccccctccggGTGTCGAtcattttccccattatcccctgtgcatttatacctgtggtctctgtctgttgccagtttgcctGTACTCATGTTTCTCTCTAGCCCTTGTTTTTCTGGTTTTAACCAccttgcctgccctgaccctgtcctggattactgacctctgcctgcctgccccctgttttgttAATAAACATATGTTAttcaaactgtctgcatctgggtcttattcTGAGGTCTGATACAAATCCATGACAAAGTTACTTTTTCAAATACTCCTACAGAGTTACATGCAGGTAAGACGTTCTCTTTCTGATACTACATATAAATCAGCAGGTTCTAAATAACTCTATAAAATTTGAGagatgagctcaatttcaaaaATATCACTTTTACCAAGATGAACTGCTTTTCCTTTGTCCTCCACACATGTTCATGTAGCTGCAGATCACCTACAGTAACAAACTAATGATAATGCTATTCTGTATTCTAATGTTACCCAAGACcttcagaaacacaaacaaaggatgttttttttttccgAGAGCATTTCTGAAATGTATTCTttagactgttagaatgttgcaGTAAAAACAGCATGAATCCAGCTCATTGGCGTAGTAAGGGGGGAATCGAGGCCTGGCAGTTTAAGTGTTAAAAACTGAACCCAAatcaacttaccttggctcctgcTGCTCCAGTGTTTCCTCGGGGGCCAAAGTCCCCTGCATCCCCCTGAGAGCCCTAACGAGGACATGCAGAAAACATGGACACGGATGGTGACAGGGCAGAATATTATTTTCTCATTTCATTACATCACCTGTCATAGATATCACCTGTTTAACGGTTAGTGGAACACCTCTGCTCTTACcaggtattattataattatttaggGCAGTATTCACCTGAAGTCCCGCCTCTCCACCCTCACCTGGTGGACCACGGACCCCTGGGAAACCTGGTGCCCCCTGGAactcctctcaccccctctgggCCTAGTTCTCCCTGCAAGATGCAACACAATGAATACAACCAACATCGAATCGACTATTGCGATGCAGTAAAAACAGATGAGATGTTTGATGTTTGTAGTTTGTTGGTGGAAACCTTATCTCCTCTCTTGCCAGCCTTGCCCCGTCGTCCAGCTCTGCCACTGTCTCCTCTGCTTCCCTGAAAGAGACATGTTCTCATGTTTCACCAGGACCCAAATAAAACGCGTCAGTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123125 lncRNA upstream 29662 5249713 ~ 5254032 (+) True G108333
TU123129 lncRNA upstream 42011 5240611 ~ 5241683 (+) True G108336
TU123127 lncRNA upstream 43344 5238227 ~ 5240350 (+) True G108334
TU123118 lncRNA upstream 57564 5225206 ~ 5226130 (+) True G108332
TU123117 lncRNA upstream 59438 5223607 ~ 5224256 (+) True G108331
TU123162 lncRNA downstream 48012 5333753 ~ 5334485 (+) True G108361
TU123363 lncRNA downstream 80090 5365831 ~ 5366530 (+) True G108529
TU123399 lncRNA downstream 89767 5375508 ~ 5376125 (+) False tg
TU123400 lncRNA downstream 94337 5380078 ~ 5380438 (+) True G108547
TU123402 lncRNA downstream 105681 5391422 ~ 5391666 (+) True G108549
XM_021587149.2 mRNA upstream 8110 5274156 ~ 5275584 (+) True mrpl32
XM_036935668.1 mRNA upstream 47800 5228057 ~ 5235894 (+) True LOC110520809
XM_036935664.1 mRNA upstream 56653 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA upstream 56653 5195939 ~ 5227041 (+) True tbc1d31
XR_005034658.1 mRNA upstream 106707 5148101 ~ 5176987 (+) False LOC110506140
XM_021595380.2 mRNA downstream 20535 5306276 ~ 5310035 (+) True ccdc127a
XM_036935725.1 mRNA downstream 35813 5321554 ~ 5349672 (+) False phf20l1
XM_036935729.1 mRNA downstream 35813 5321554 ~ 5349672 (+) False phf20l1
XM_036935735.1 mRNA downstream 35813 5321554 ~ 5349672 (+) False phf20l1
XM_036935741.1 mRNA downstream 35813 5321554 ~ 5349672 (+) False phf20l1
TU123045 other upstream 146702 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 425420 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 472119 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 538108 4744168 ~ 4745586 (+) True G107922
TU120940 other upstream 1145198 4137813 ~ 4138496 (+) True G106814
TU123151 other downstream 10438 5296179 ~ 5299933 (+) True G108354
TU123438 other downstream 220805 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 295552 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 434224 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 434224 5719965 ~ 5725382 (+) True G108682

Expression Profile