RNA id: XM_021595380.2


Basic Information

Item Value
RNA id XM_021595380.2
length 1647
RNA type mRNA
GC content 0.46
exon number 4
gene id ccdc127a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5306276 ~ 5310035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAAAACAAGTGGTCTCTTTGTAATTGTCTTGCGTAAAAGCGTATAATCGCTCTTTCCCATCGGTACAGGGACAAATGTATAGCTACTTGACCTAGACACATTTTGTCAAGGGCACCTCCATGAACAACTTGAATGACCCCCCTAGATGGAACATGGGGCCAGACCCACAAGAAGGTGCTGCTGCTGACGGGAACAAATGGAATTATGCCCTCCTCGTGCCAATGCTGGGGCTGGCTGCCTTTCGCTGGATCTGGACCAGAGAGTCTCAGACAGAGATCATAAAGGTCAAGGCCCGGTACGACCAGGACATGTCTGCCGTGACCTCCAACCTTGAGATGAAGTACAGAGACACCCTGACGGAGAACCGGCGGGCAGCGGCCATCTTAGAGCTggagctggagaaggagaggcagagggtCCAGGGGTACCGCCAGGCCCTCATCTCACAGAGCCAGCAGGTCATGGAGGAACGCAAACAGCTACAGGTGGAACGAGAGGCTCTGGAGCAAGAGAAGATTAAGCTTTTAGAATCCGGCGCCGCTGGGGCCGTCCTCCAACACGCTCTGGCCAGAGAGAGCGACTGGCACCAGAGGGCCTCAGCCATGCTGAAGGATCTGGAGGAGGACCTTGTGGAGAGACAGGGGGCCTACTGCAACCTGCTCCTCCCCAGGGAACATAGGCTGGAGATGGAGAAGAACCTGCTCCTCAAGGTGGTGAAGGAACCGTTGGGAACGGATACAGatctggagggagacctgaagGATATCTTTAAGAACGACCGCTACTGTGCCAAAGGCAACAATCGCCTCCTCAACGTGAAGAAAATGGACAAGAGGAAGAATGGTAGCTTGATGTGGCTCTACCTCAGATATTGGCAGCTTCAGGTTACCATGGAGACGCATAAACGGGCAGAGGACTCAATACTGGGAGTTACACCAGATAAGAACGACCTCAAGTGACCTTGATAGAGTTGACCTTGATAGGGTTGACCTTGATAGGGTTGACCTTGAGTATATAGTAACAGTCTTCTTGACtgcacaaatgttttattttttcacTAAATGGTGAATTAGTTTGTATATTTCATTTCCTCTACATCGTTTTATGACTCCTGACAAATGTAAACGCTTACTTTGTTACTAGTGAAACACAGTAAATGCCAATGGAATTGTCATTGAATGTCAGGGATATTTTCACAACTATAGTTTTGTCTTCGCACTCCAAACCCAATGTTGGATGATATGATACAGTATCATGAATTCTAGAGGAATATTTCCTTTTGATAAAATCATGTATATCCACATTGGACATCACAGCTGTTTGGTCAGTCATGTAGAAAAGAATAGTGatatacttttattttgacaGAATATACAAAGTTATAACAGACTGTGGTTGTGTCATACGATCGTGTAATGACATGTAATAACATACTGACATCTCTGACTAGATACTTTGTGTGGGTTATTTAATTAGAGGTATTGGTTGAGTAAAGCCCAGGACTGACAAGCATTGCTGACCATAGCTTCCACAGGCTCCATAAAGTTTGAACTAATGTAAACTGAATCAAAGAAATAGACCTGagcaaacatttacattttattcaTGTAGCGGACACTCTCGTCCAGAGATGAAGTTTtgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123089 lncRNA upstream 20547 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA upstream 20547 5285007 ~ 5285729 (+) True LOC118937366
TU123125 lncRNA upstream 52244 5249713 ~ 5254032 (+) True G108333
TU123129 lncRNA upstream 64593 5240611 ~ 5241683 (+) True G108336
TU123127 lncRNA upstream 65926 5238227 ~ 5240350 (+) True G108334
TU123162 lncRNA downstream 23718 5333753 ~ 5334485 (+) True G108361
TU123363 lncRNA downstream 55796 5365831 ~ 5366530 (+) True G108529
TU123399 lncRNA downstream 65473 5375508 ~ 5376125 (+) False tg
TU123400 lncRNA downstream 70043 5380078 ~ 5380438 (+) True G108547
TU123402 lncRNA downstream 81387 5391422 ~ 5391666 (+) True G108549
XR_005034673.1 mRNA upstream 20535 5283694 ~ 5285741 (+) False LOC118937366
XM_021587149.2 mRNA upstream 30692 5274156 ~ 5275584 (+) True mrpl32
XM_036935668.1 mRNA upstream 70382 5228057 ~ 5235894 (+) True LOC110520809
XM_036935664.1 mRNA upstream 79235 5195931 ~ 5227041 (+) False tbc1d31
XM_036935658.1 mRNA upstream 79235 5195939 ~ 5227041 (+) True tbc1d31
XM_036935725.1 mRNA downstream 11519 5321554 ~ 5349672 (+) False phf20l1
XM_036935729.1 mRNA downstream 11519 5321554 ~ 5349672 (+) False phf20l1
XM_036935735.1 mRNA downstream 11519 5321554 ~ 5349672 (+) False phf20l1
XM_036935741.1 mRNA downstream 11519 5321554 ~ 5349672 (+) False phf20l1
XM_036935748.1 mRNA downstream 11519 5321554 ~ 5349672 (+) False phf20l1
TU123151 other upstream 6343 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 169284 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 448002 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 494701 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 560690 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 196511 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 271258 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 409930 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 409930 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 470179 5780214 ~ 5782644 (+) True G108702

Expression Profile