RNA id: XM_036935729.1


Basic Information

Item Value
RNA id XM_036935729.1
length 5511
RNA type mRNA
GC content 0.50
exon number 27
gene id phf20l1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5321554 ~ 5349672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACGTCGTTACGTCCTCTATTTTATTTAGGGTAAATATCTGAGCAGAAGAATGGGAAGAAGACTGATATGTACTCATGATATGAGTTTATAACAATAACGATCATTTACCAAATGTGTTCGCAAAGctgccacagacagacagatcatcAGTCTTGAAACATAGACGTTGTGAAGATGAGCAGGAAGACACCTAATCGTCCAGGGATCACTTTTGAAGTCGGTGCTAGAATTGAAGCTCAAGACTATCTACAAAAATGGTACTCGTCACGCATTGAGGACATCGATTTCGATGAGGGGAAGATGCTTGTCCACTTTGATCGTTGGAGCCATCGATATGACGAGTGGATCGCCTGGGACAGCACTCGGCTGCGACCTCTTGAAAGGCCAACACTCCGTAAAGAGGgactgaaggaagaggagggggaggtgactGAGAGACTCAGCGAGATGTCAGCATCTCGCCTTGATGAGCTTCCTGGATGTACAGCGAGCACAGAGGACCAAACAGAGTTACCGCAGCCGAGACAACCtgttgatgtcaccaggcaggccaaaactccatcccaccaaaaaaggctgaaatttcagGAATTGAGAGATGGTGAAGAGGTGCTTGCTCGATGGACAGATTGTCGCTACTATCCTGCAAAGATTGAATCTGTAAACAAAGAGGGTATCTACACGGTGCAGTTTTATGATGGAGTTATTCGCTGTGTGAAAAAAATTCATATCAAATCTATGCCCCATGATGCAAAAGGACAGGACTGGATAGCCCTGGTGAAAGCTGCCTCGGCTGCAGCCAAGAGCAAAGGAAGCAGTACGCCTCGTACCAGTGCCAACAGCAACAAGGACAGGGACGACCCTCACGGAGGGAAGTCTGACGATGAGGACGGTCAAGAAGAGCTGGATGAAGAGTTGCAGGATCAGTCCGACTCTGACAAACTGGAATCCCATGAAGATGATGCTGACTGTAAGAAGGAGCGGACAGAAGTCCCAGTGACGTCCCAACAACAGAAGGTACCAAGAACAGCAGACCATGATTCCTTACAGGGGCAGACCCAGAGACAGACGGGGTCCTCTGTGACGGGCTCTCCAGCCAAGTGTCGGAACAGGCGTCTGAAGCACCACTCTGGGGAGTCCAACAGCAGCCAGAAGCAGAGAGCGTCCAGGCCGCCGTGCTCCATCACGACTCTGTCTGCTGGGGAGGACACCATGTCAGCCCCAGAGTCCATGCTGAGTCCCTCCCCCAGACACAGCTGCCCAGACACGGCTACCTCAGGGCATGGTGAGACGGTTCCTCCAGGCTCCCCCAGGAGCTCAGAACAGAGCCAGAGGAGGAGACGCTCCCAGCGCCTGGCCACCGTCAGCCCTGATATAAACTCTGACCCCAGCGTGACCTCTCAACCCGCCACCACCCAGTGCGCTGACCTCTCACCCCATGGGAGGGAGCACAACACATCTCACAAAGACCCCTCCTCTCCAGAGGATCAAATGACAAACTCTGTGGAGAAGGCAGAGTCATCGACCCTCCACAACTACTGTGTTGACATACCACCTACACCTTCATCTGCTGTCTCCATCCTCACACCATCTCATCCACCAATCACACACCGAGACCAGCTGACTGACGGGCCATCATCAGCCAATCATACGGCAGTGGCAGACAAATTCCCACCCTTAGCTGCAGCTGCTGGGAGGAGAAGTATTACCAGGACCTCTAAACTAAACAAACACACCAGGGAGCCAAtcatgAACACCAAGTGGTGTGATGACCCAACGTCTCCCAACGACCTGGACCTCTACAAGTGTAAGATCCCTGGGTGCTCCAAGGCCTTCCGCAAAGCCAAGCTGCTGGACTACCACCTCAAGTATTACCACAACGCTGACAAGGACCTCCAGGACTCTGAGCTGCCAGGCTCCCCAGACAGGGCTGGTCGTACCCGGGCCACCTCAGCCTCCatgcccaccaccaccaccctgctGGAGGTCCCTGACAACACAAAGAGACGCAGGACTGTCTCCACTTCATCGTcaCTGTACCCTCCGGGCCATATGTTccaactggactgtactggactgggGAGCTGTCTGAAACCTCCCAGATTGAACAGGAAGAAGCGCTCCTCTGCCTCTATGAGCTCTGACAGCACAGAGCTGTCTCTCCCTCCGCCACCTCAGGAGAAGAGCTTCGAGTCCCTCCACGACAAGATTCTGAAGAAGGTGATCGATAAGGACAAGCACCTGGAGCCAGGGTTAATAAAGAATGAGAAGAAGGTGAAACTGGAGGAGAAATCCCAGGTGATCGGAAAAAAGAAGGACAAAGAGCGGAGGGACAGGAAAGAGAAGGAACACTTCAAGatgaaacagaagaagaagaagaagaggaagaggaaatcCAAGCAGCACTGTTATTCTGACTACGATGACATGTCCCTGTCCTTCCTGGAGCGATCTACGACGTCTGCTCTTCaccgctcctcctcttcctcctgctccaccaCCAAACATTACCAGTACCCCCGCGCCATCCTCTCTGTGGACCTGAccggagagaaccTGTCAGACATAGAGTTCCTGGAGGACTCGACCACAGAGAGCCTGCTGTTTAGTGGAGATGAGTACAACCAGGACTTTGACTCTCTAAACATGGAGGACTtccaggaggaggatgaggatggtaCCCAGGAGATCGTCCGCTGTATCTGTGAGATGGACGAGGAGAATGGATTCATGATTCAGtgtgAGGAGTGTATGTGCTGGCAGCACAGTGTGTGTATGGGGCTTCTGGAGGATAGCATCCCAGACCAGTACATATGTTACATCTGCAGAGACCCTCCAGGTCAAAGGTGGAGTGCCAAATATCTCCATGACAAAGACTGGTTGAACAAGGGTCAGATGTACGGCTTGTCCTTCCTCTCTGAGAACTACTCTGAGCAGAACTGTAAGACCAGCGTGTCCACCCATCAGCTGTTAGCAGACGTGTTCAGTGTCAACAACGTCCTTCACGGACTACAGCTGAAGATGGACATACTACAGAACAAACACAATCCCAACTTGCACTTCTGGGCTCGGTCATGGGTGAACTCTGACGAGGACCAGCCCATGGGCGGTCTCCCTGACTGCATCCACTTGACAGACAACTCTCTGAACAACCAGAACTCCTCCAAGACAGACACTTACATCACCAGCGAGCACAGCTACCAGAAACCCCCCAGCCCCGGACAGCTGGAACACTGGCCCTCTACAGACCCCCACGGCTCCAACAgccaggagggaggaggggtggtggctAATACTAACCCCGCCTCCCACTCCACCCACTTCACAGCCAAGGAACAGGAAGTAAGAAAGAAGACAACTGCCCTGGCTGTGCCTGGCTCCCTGGCTATGCCTGGCTGTCTGAATGAGAGGGGACCAGACTCAGTGCTGGCTGTGCCTGGCTGTCTGAATGAGAGGGGACCCGACTCAGTGGAACATGCCAGGAACTGTCTCCAGTGGCAGATGAACCTCCTGACTCACATAGAAGATGTTCAGAACCAGGTGGCGGGCAGGATGGACCTCATAGAGAAGGAGCTCGATGTGTTGGAGAGCTGGCTGGACTTCACTGGGGAGTTGGAGCCTCCGGACCCCCTGGCCAGACTGCCTCAGCTCAAACACCGCATCAAGCAGCTCCTCACAGACCTGAGCAAGGTGCAACAGATGAGCACCCTGTGTTCTGTGTGAGTTTGGGTTGGCCTGACCTAGGTAGAATCTGGCCCGTGTCTGGCCTGGGTTAGCATGGCAACAGCACCAGGCATCTGGTGTCATCACAGCACTTCACAGAGGAGAGTCCTATCCAAACCCAGGGTGaaccccgtcctctctctctggcaccGAAGCACACCGTCTGCTGTGGTCCATAAACTGTCAAACTGAGCATACCTTCTCCTCCTAGACAGACTGTGGGAGTGAAGCTTCAGTTGGCTCAATACAAGGGGGGTGAATGGACGTATAGAGACCAACAGGATAGAGTTGGGTCCAGTGGACTCTTGGTATTGGAAAGAAGGGTGTTTTGAGCTGGAGTAACTGACAAGTATTGAGTTGACGAAATGGGACTTGTGGATGAAAAGTACCAGTGTAACACAGTGTTAGTTTGTAGGGCCCAGGACGTTTGTTGTTTTAACTAAGACTCCCTGTTATGAAGTGAAATGCCCACAACGTTTTCTTAACCAGGAAATTAGGGTTTGTCCACGTACATTAAATCTGTTCACACGCATTCTATGAAATAGCTGAaattcaatttaattcaattaGATTATTAAAATGCTATGAGATCACCTCGTCATGGGTCcgtcccaaatagaaccctattccctttatagggcactactttagaccgtagtacactacagtatgtagggaatatatagggggccatttgggaaacGACCCACCACTCTCTTGCCTCAGTAGGAGCAGAGCTGTGGAAGCCTTGCTTGTGTGATATGAGTTAATGCAAAAATCTAAATCACCGAGGTGAATGTTAGATGATATTGTAGCTTTAACCTGCCAGAAATCTGTTCTGTTTTGGAAACGTGGTCTGAAACTTGTTTGACAAGTTCACACTAGGGTGAgatgatttgtttaaaaaaacagtGCTAACATCAGTCATTTAGCGACTGCATTCTGATTTCATTTCAGGAATCTATTGCCACCTTTTACAATCGTTAACTTTCATTCTCTTTATGTGCCAAGTCTGAAGGTATGACCCGCCAAGTTTACAATGTTAACATGGGGAAAGATATATCTATTTGACTGGTGTATATAATATACCCAATCCACAGACAGACATACGACTGTGTGTCTTCGGGATATCTCCATGACAACCACGGAAATGGCCTCGATGTCACGGGACATCTGTGGCacgtttgtctctgtgtgtatgtcccgaaatggcaccctattccctatgtagtgcactacttttgaccctgaGCCCTATGGGAGCCTGTTCAAAAAGTAgcgcactgtgtagggaatagggtgccatttgggggacgTAGCCTCTGTCTGTGGGGTTTTTGATGCTTTCAGTACGGCCCCGGTATGGCTGCTACGTCACATAACACCACAATGTCTTCGGGCTAAGGGGACACGTTTGACTTGTACCACAGGAAGCTAAATTGCCAGCTGGATGTGAAAtgcgtatttaaaaaaaaaaaaaaagcaatgtGTTGATTGCTGTTTTTTTGGGTCATTTTATGTACAGTTTTTATAACTGTAAAGATGAGGAGACATCTGTAGAAATACATAAGAGGATAAAATATACTTGAAGAAAAATGACTATGTTTATTTAGCGTTTCTATTAACCTGTATAAAAAAGTGTTTTAGAACCAGTCGGTAGGGGAGAAAACAAAGTAGATTTTTATTGACATATACCAGCTGTACATTAAGAGTTTATTTAAGACCTGTTCTTTGTGATTTACTACATGTACAATGCCATTAAAAAAAAGATATTCTGGATATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123089 lncRNA upstream 35825 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA upstream 35825 5285007 ~ 5285729 (+) True LOC118937366
TU123125 lncRNA upstream 67522 5249713 ~ 5254032 (+) True G108333
TU123129 lncRNA upstream 79871 5240611 ~ 5241683 (+) True G108336
TU123127 lncRNA upstream 81204 5238227 ~ 5240350 (+) True G108334
TU123363 lncRNA downstream 16159 5365831 ~ 5366530 (+) True G108529
TU123399 lncRNA downstream 25836 5375508 ~ 5376125 (+) False tg
TU123400 lncRNA downstream 30406 5380078 ~ 5380438 (+) True G108547
TU123402 lncRNA downstream 41750 5391422 ~ 5391666 (+) True G108549
TU123404 lncRNA downstream 48665 5398337 ~ 5398594 (+) True G108551
XM_021595380.2 mRNA upstream 11519 5306276 ~ 5310035 (+) True ccdc127a
XR_005034673.1 mRNA upstream 35813 5283694 ~ 5285741 (+) False LOC118937366
XM_021587149.2 mRNA upstream 45970 5274156 ~ 5275584 (+) True mrpl32
XM_036935668.1 mRNA upstream 85660 5228057 ~ 5235894 (+) True LOC110520809
XM_036935658.1 mRNA upstream 94513 5195939 ~ 5227041 (+) True tbc1d31
XM_021598289.2 mRNA downstream 101827 5451499 ~ 5457130 (+) True ccn4b
XM_036935926.1 mRNA downstream 131303 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA downstream 156868 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 193322 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 193322 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 21621 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 184562 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 463280 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 509979 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 575968 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 156874 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 231621 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 370293 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 370293 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 430542 5780214 ~ 5782644 (+) True G108702

Expression Profile