RNA id: TU123399


Basic Information

Item Value
RNA id TU123399
length 338
lncRNA type sense_over
GC content 0.46
exon number 2
gene id tg
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5348252 ~ 5447200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtcagtgtgtgatgAGTCTGTACAGGTTGTCTGACTACTGGGATGTTCATCTCTGTGTCAGTATGTGATGAGTCTGTACAGGTTGTCTGACTACTGTGTCTCTCCTGTTCTAGCTgacgtctgtctctgtgtccgtGTGTGATGAGTCGTCCGTCTCTgtagagtgtgtgagtgaggaaAGCGTCAGTGTTCAGGTCAGCTGGAGGGCTCTTCTCTCAGACCTTCCTATCTCTGTTCTGCCTGATCTGCATGACGTCGGTAAGGAGCACAGACAACATTTCAGAAATATTTCTCAATGAAAAACACCAAAAAATACTGTCTCACACCCTTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123363 lncRNA upstream 8978 5365831 ~ 5366530 (+) True G108529
TU123162 lncRNA upstream 41023 5333753 ~ 5334485 (+) True G108361
TU123089 lncRNA upstream 89779 5283628 ~ 5285729 (+) False LOC118937366
TU123088 lncRNA upstream 89779 5285007 ~ 5285729 (+) True LOC118937366
TU123125 lncRNA upstream 121476 5249713 ~ 5254032 (+) True G108333
TU123400 lncRNA downstream 3953 5380078 ~ 5380438 (+) True G108547
TU123402 lncRNA downstream 15297 5391422 ~ 5391666 (+) True G108549
TU123404 lncRNA downstream 22212 5398337 ~ 5398594 (+) True G108551
TU123395 lncRNA downstream 22786 5398911 ~ 5399364 (+) True tg
TU123407 lncRNA downstream 25431 5401556 ~ 5401846 (+) True G108554
XM_036935752.1 mRNA upstream 25836 5321554 ~ 5349672 (+) False phf20l1
XM_021598289.2 mRNA downstream 75374 5451499 ~ 5457130 (+) True ccn4b
XM_036935926.1 mRNA downstream 104850 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA downstream 130415 5506540 ~ 5542867 (+) False ptp4a3b
XM_036935869.1 mRNA downstream 166869 5542994 ~ 5572618 (+) False dync1i1
XM_036935874.1 mRNA downstream 166869 5542994 ~ 5572618 (+) False dync1i1
TU123151 other upstream 75575 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 238516 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 517234 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 563933 4808739 ~ 4811575 (+) True G107955
TU122634 other upstream 629922 4744168 ~ 4745586 (+) True G107922
TU123438 other downstream 130421 5506546 ~ 5542865 (+) True ptp4a3b
TU123443 other downstream 205168 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 343840 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 343840 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 404089 5780214 ~ 5782644 (+) True G108702

Expression Profile