RNA id: XM_036935897.1


Basic Information

Item Value
RNA id XM_036935897.1
length 2986
RNA type mRNA
GC content 0.48
exon number 17
gene id dync1i1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5542994 ~ 5572618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACATTATTATTAGTGGCATTGTTGGCCTGAATTAGTTTTTGCATTTTCTGAAATAGATTTATCGTTTTCTCTTCAATGACCATATTGTTAATTTGAGATTATAATATGGCACATGTATCATCTATATTGTAGAGTAAGTCATCACTTTATTATCTCAAACATTCCTGTTTGTACAACAATGACGTATGATATACAGGCTACTTCCGGACGGAATCTAATTACAATTGAGAAAGAGGGCAGAGCTCGAACGGCAAATTCTATGTCCTTTGTTGTGTTATATAAACGTCTTGTCCGTGGTAATATTGTCTATATAAATCACGCAGGTCTTTTTGCCTGTGGCACGTCCGATATAGCTAATTCTGGAAAGGACCCGAGATAAACGCAAGGCACAGTGCAGACGGCAGATTGCTGCTTTCTTATCTATCTAGTAGGACGAAGATGTCTGACAAAAGTGACCTGAAAGCTGAGCTGGAGCGAAAGAAACAGAGGCTAGCTCAAATacgagaggagaagaagagaaaggaggaggagaggaaaaagaaaGAGTCTGAGAGTCTGCAGCAGAAAACAGAGAATGTCTCTGAAGATTCTGACTTGGACCGCAAACGAAGAGAGACGGAGGCGCTGCTGCAGAGTATTGGGATCTCACCAGAACCACCATTAGTCCCAACCCCTATGTCTCCCTCTTCACAATCAGTGAGCACCACCAGTGATGCTGGCAGCCAGGAGTCCGTAGATGGGGGGACAGTGGGAAGGACCCTGCAGTGGGACACGGACCCCTCTGCTCTCCAGCTGCAGGCAGACTCTGAGCTGGGGCGCAGGATGCACAGACTTGGAGCGTCAAAAATAGTACAGATTGACTTCGTTCCCAAAGAGCTTGTGACCTACACTAAAGAGACCCAGACTCCTTCAGCAGCACATCAATCTGAAGaagaagaagaggatgaggagagcaGTGAGCCTAAAgcttcccctcagactgaccagccggaggaggaaggagaggcagaggacAGTAAAGAGGcccatcccagaGAGCtgacggaggaggagagggaacagatTCTCCACTCAGAGGACTTCCTGGTGTTCTTTGAGCGGTCGGTCTCTGTGGTGGAGCGGGCGCTGGCCGAGGAGGGAGACATCTTCTTCGACTACAGCGGCCGGGACCTGGAGGACAAAGAAGGGGACATGCAAGGTGGATCCAATCTGTCTTTCAACCGTGTGTTCCATGACGATCACTGGTCCAAACACCGAGTAGTCACCTGCTTAGACTGGTCTCCACAGTACCCTGAACTGATGGTGGCCTCTTACAACAGCAACGAGGATGCTCCACACGAGCCTGATGGGATAGCGCTGGTGTGGAACATGAAGTTCAAGAAGACCACTCCAGAGTATACATTTCACTGCCAGtCGTCAGTGATGTCTGTGGGCTTTGCTCAGTTCCATCCTAACCTGGTGGTGGGGGGAACGTACTCAGGACAGATTGTGTTGTGGGATAACCGTAGTCACAGGAGGACCCCCGTCCAGAGGACCCCCCTGTCTGCTGCGGCACACACTCACCCAGTGTACTGTGTGAACGTGGTGGGTACCCAGAACGCCAACAACCTGATAACAGTGTCTACTGATGGGAAGATGTGCTCCTGGAGTCTAGACATGCTCTCTCAGCCTCAGGAGAGTATGGAGCTGGTCTACAATAAGTCCAAGCCCGTAGCAGTAACAGGAATGGCCTTCCCTGCCGGAGATGTTAACAACTACGTGGTGGGAAGCGAGGAAGGGATGGTGTACTCTGCGTCCCGCCACGGCAGTAAAGCAGGTATAGCTGAGATGTTTGAGGGGCACCAGGGCCCAGTGACTGGGATCAGCTGCCATAACGCTGTGGGCACTGTGGACTTCTCACACCTCTTCATCACGTCCTCATTTGACTGGACTGTAAAACTGTGGTCCATCAAGcacaACAAGCCATTGTACTCCTTTGAGGATAATGCAGACTATGTCTATGATGTCAGTTGGTCCCCTGTGCATCCGGCTCTCTTTGCCTCCGTGGATGGGATGGGTCGTTTGGACCTGTGGAACCTCAACAATGACACTGAGGTGCCTGCGGCGAGTGTGACGATCGAGGGGGCGTGTGCTCTGAACCGTGTGAGATGGGCGTCGGGAGGCAGAGAGGTTGCCGTGGGTGACTCGGAGGGACGTGTCTGGATCTACGATGTGGGAGAGCTGGCAGTGCCACACCCTGAGGACTGGAGCCACTTCGCCCGCACCCTAGTTGAGATCCGTGCCAACCgcggggatggagaggaggagggggccgTGGAGCTGCCAGCCTGAAACCTTCTCACCCTCTCATCAATGGATGCATCGTTTCAGGACTGACAGCCTGATAACAGACATTTACAGACAACAAACCATCATTTACTGACGTAACACAACAGCAGCACACATGCTTCAGTGAGGTTCAAGTCATTGGGATTAGACTGACTCCAAGCTTATGCTCCATAGATCAAAGTATGAAATGCCGATTTGCCCGGGGCAACAACTATTCTTACCAGggttatttatttgttattggTTAATTAAACAGTTGATATGTATATACTTGATATCAGAATCATATGGCTTGCAATGATAATGTGCTTATGGGTCTAATGTGGGTCTAAATGTTGGAGTGAGCTAGATATGATCCTTATATTCTACTCATGAGGTTTGATTATCAGATTCCTGTGACTGTTCGTGTTCTTCTTTCTTCAAGGTTATAAAAGCTGCATGAATAACAAGTTGGATCATTGTTTTCTCAAGATATCCAAGTGAACCTTTAATAATGTTTTTAAGTAGCTTTTGGGCTTTTCAGTGCATTAGCATGATAATTATTACATTTTGGTTGCTGTTAAACAATTTTGTTTTGTTCTAAGAAATAAGTCTAAAAATGTATGGCTTTTTGCTGTAAGGACAACAATTGACAATAAAATAAGGATAAATACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123483 lncRNA upstream 8875 5532987 ~ 5534119 (+) True G108616
TU123482 lncRNA upstream 10536 5529962 ~ 5532458 (+) True G108615
TU123480 lncRNA upstream 13928 5526704 ~ 5529066 (+) True G108613
TU123472 lncRNA upstream 33830 5508438 ~ 5509164 (+) True G108608
TU123461 lncRNA upstream 50250 5491991 ~ 5492744 (+) True G108598
TU123445 lncRNA downstream 833 5573451 ~ 5575009 (+) True G108583
TU123450 lncRNA downstream 28045 5600663 ~ 5602911 (+) True G108588
TU123446 lncRNA downstream 32365 5604983 ~ 5606316 (+) True G108584
TU123488 lncRNA downstream 39798 5612416 ~ 5613037 (+) True G108621
TU123489 lncRNA downstream 40967 5613585 ~ 5614123 (+) True G108622
XM_036935926.1 mRNA upstream 127 5480975 ~ 5542867 (+) False ptp4a3b
XM_036935931.1 mRNA upstream 127 5506540 ~ 5542867 (+) False ptp4a3b
XM_021598289.2 mRNA upstream 85864 5451499 ~ 5457130 (+) True ccn4b
XM_036961549.1 mRNA upstream 95794 5348252 ~ 5447200 (+) False tg
XM_036935771.1 mRNA upstream 193322 5321554 ~ 5349672 (+) True phf20l1
XM_036935852.1 mRNA downstream 2748 5575366 ~ 5590651 (+) False LOC110506279
XR_005034680.1 mRNA downstream 2748 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA downstream 2749 5575367 ~ 5590752 (+) False LOC110506279
XM_036935845.1 mRNA downstream 2761 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA downstream 2763 5575381 ~ 5592253 (+) False LOC110506279
TU123438 other upstream 129 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 243061 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 406002 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 684720 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 731419 4808739 ~ 4811575 (+) True G107955
TU123443 other downstream 8675 5581293 ~ 5582450 (+) True LOC110506279
TU123575 other downstream 147347 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 147347 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 207596 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 327893 5900511 ~ 5900950 (+) True G108733

Expression Profile