RNA id: XR_005034681.1


Basic Information

Item Value
RNA id XR_005034681.1
length 4307
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC110506279
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5575366 ~ 5592253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAATGGAGTGGAAACCTTTTACAAATGTGTCAAGGGTAGACTATGCCTTCTGGTCATCCCAGCCACTGGGGGAGAACATCCCAAACCAGCCTGCTTTTCTCTCCACAGGAAGACTTTATCCGCCATATTTGTTGTCGCAGATTCGCCAGAAACCTTCctcaaaacaaataaaaatacgaTTTTCAATTACTTATTCAATAAGTAATGTAGATATAAATAAATGTACATGTAACTCTTAGGGTATTACGTTTTATTTTACAAACATGGCGACGTCAACTGCAGGTGGGACTTCCTCCATCTTCATGTGTAAACTGTGCAACCTGTTCTCTCCACACCGAGCACAGCTCCTCTCCCATGTGTCTGAGAAGCACCACACAGAGGGGCTCAACCCTGATGACATCATTGTGGCCCTCATGCCATTAACAGGTCCACTGGAGAATGGTGGAGGTGAGCACCTCCTCAAAGCAACCAGGGATACTAATGGTGGAGATAGCCCTGTTAAGAGAAAACGAGGACGTCCTAAAGGCTCAACCAAGAAGATTGTAGCTGATGGGCCCATGACAGAGACTACTAGCCCCAACCAGAAAAAGCAGAAACAACAGATAGTAGAGGCCCAATCAGAAGCTGGGCCAGTGGACGAGGAAGAACCAGAGGACAACAATGCCCTGGACTGCAAGAAGTGCAACCGTGTGTTCGGCAACAGACGACAGATCATGAAACACATCTGCTTGATGGACCTCAGAGAGGATGAGGATCAGGAGGAGGACAACGACAAAGAGTTTGAGGCTCAACCTGGCGCAGCAGAAGGCAaagaggaggatagggagagaAGCTCAAAGAGGCCACGGCCGCTCCGCTCTGAGAGGGTTTCTCTTGTGAAGGAGCAGGAACCAGCAGGAGGCCCCAAGAACCCCATCATCAGTGTGGTTCTGACCGCTCATGAGGCACTTCCTGGTGCGACAAGGATAGTGCCGATCGAGGCCACCCCGGCAGAGCCGGTTGCTCCAGCAGACACAGACCCTCAGGAGGCAGGACAGAAGAGAGGATTTCAGGAATATTCCATACAACAAGCTGCTTATGAAGTGCCATTAAAGTCAAACAGAATAGGACAGACCCAGTTGAAGATCTTCACCTGCGAATACTGCAACAAGGTCTTCAAGTTCCGCCACTCGTTGCAGGCCCATCTGCGAACCCACACCAACGAGAAACCTTTCAAGTGCCCACACTGTGACTACGCCAGTGCCATCAAAGCCAACCTCAGCGTTCACTTGCGCAAGCACACGGGAGAGAAGTTCAGCTGTGAACACTGCTCCTTCCAGTGCCTCAGCAAGGGCCACCTCAAGGTGCACGTGGAGAGAGTTCACCACAAGATCAAGCAGCACTGTCTCTTCTGCAAAAAGAAGTACTCTGATGTGAAGAACCTGCTGAAACACATGAGGGAGAGCCACGACCTAGAGGACAAGAAGGTGAAGGACTCGTACCATGAGTATAGTCTACAGACCAGGGAAGGCAAGAGGCAGCTCCTCTACGACTGCCAGATCTGCGACCGCAAGTTCAAGAACGAGCTGGACCGCGACCGCCACATGATGGTTCACGGTAGCGAGAGGCCGTTCGGCTGCGAGCTGTGTGACCACGGCTGCACCAAGTTTCAGGCTCTCCAGGCTCATGTCCGTAAGCATCCCTTCCTCTACGTGTGTGCTGCCTGCCAGCAGAAGTTTGTCAGCTCCGTGCGGCTGAAGGCCCACCTGAAGGAGGCTCACCCAGAGTCAGAGGAGGCGGTTGGGTTCTCAGAGTCCATCAACAGCAGCTTCTGTCTGCTGGAGCCGGGGGACGACATCAAGAGAGAGATGCTGAGACAGGATGAGATCAGGATGGCTGAGGAGCTATCTCTACTCAACGcccagcaggaggaggaggaggccttcACTGGTGACCCTTCAGAGGAACAGGAGGCCCTCGCTGGTGACCCttcagaggaacaggaggaggccCTCGCTGGTGACCCctcagaggaacaggaggaggccCTCGCTGGTGACCCttcagaggaacaggaggaggaggaggccttcGCTGGTGACCCctcagaggaacaggaggaggccCTCGCTGGTGACCCctcagaggaacaggaggaggccCTCGCTGGTGACCCTTCAGAGGAACATGAGGAGGCCCTCGCTGGTGACCCttcagaggaacaggaggaggaggaggccctCGCTGGTGACCCctcagaggaacaggaggaggccCTCGCTGGTGACCCCtcagaggagcagggggaggaggaggtccTCGCTGGTGACCCttcagaggagcaggaggaggaggaggtcctcACTGGTGACCCCtcagaggagcagggggagggagaggaacaggaggaaggactgggagagggagaggaacaggtgGTCCCTGATCCGGGGCCTGAGGAGACATGCGTGTTAAATCAACCTGCACAAGAGACTGAGACTCTACAAGACAGAACTGAGCCAATCAGTCCTGAACAAACCCAGACAGCAAGCAAAGGCACGACCCAGGAAGTAATCAGTGAGGAGAGAACTGATAAGACACTGATGGAGGAAGACAAGCCTCATGGGGAGAATAACGTCATTGTGGCTGAACAAGACACTTTGGTAGAAAGGCCTTCAGGCAAGGAGGAGTCAGTGGGCCACCAGCAGCATCCAGAAGAAGAAAAGGGTTCTTCATCAACATCACAAGGTCATGTTGAGGAGACTCTCCGGTCTTTGGTTCTGATTCAGGGGGAGGTCATAGGTCAAACAAACGCTTCAGCTGGCCCACAAGGAGAAGATGGCACAACGGAGGAGAGGAGCGCTTTCCAACAGATTCTAGATAAGTTGCAGAAAAGGCAGCTGAACATGGTTGTCTTTGACAGAATCCGAAAGGTATACGGGGACCTGGAATGTGAATACTGTGGAAAGCTCTTCTGGTACCAAGTGCACTACAACATGCATGTGCGTACTCACACAAAAGAGCATCTACATTACTGTACCCAGTGCAGCTATTCGTCCATCACCAAGAACTGTCTGAAGCGACATCTGATCCAGAGACACAGTAACATCCTGCTCCAGTGCCCCATGGAACACTGTCAGTACTGCACACCTGACAAGTACAAGCTGCAGGCCCACCTCAAAACACACTTTGACAATGAGAAGAAAAGCTTTGCTTGCCCTGTGTGTGAGGAAACGTTCACTGAAGATAAACTTAAGCATCATATCAAGAGCTTTCATCCAGATACGCCGATGAACACCATCTCCGAGGCGCTTGGGGTGAGGGTGCAGGTGAAGGGCTTGATCGGGAAGAGAGCGTCTAAGTGTCCTTACTGTGACAGCTACTTCATGAGGAACGGAGCTGATCTGCAGCAGCACATCTGGGCTCACCAAGGAGTGAAGCCCTTCAAGTGTTCCCTGTGTGACTACGCCAGCCGCAGTAAGAGCAACCTGAAGGCCCACATGAGCAGACACACCACGGAGAAGACACACCTGTGTGACATGTGTGGCAAGAAGTTCAAGTCCAAGGTCACTCTGAAGAGCCACAAGCTGATGCACACAGAGGACGGCAAGCAGTTCCAATGTACAGAGTGTGATTACAGCGCTGCACAGAAACCTCTACTGGTACGACACATGGAGCAGCACGCCTCTTTCAAGCCCTACCGCTGCGGCCACTGTCACTACTCCTGTAACATAGCAGGACCCCTGAAGAGACATTACAGCAAGAAGCACCCCAACCAGGCGTACTGTAACGCAGGGCCTGGGCCAGCCACCTCTGAGGCTGTGGAGCAGCAAGGTGGAGTGAAGTGTCCTGTGTGTGACTATGTCCTATATCTCTAGGTGGAGTGAAGTGTCCTGTGTGTGACTATGTCCTATATCTCTAGGTGGAGTGAAGTGTCCTGTGTGTGACTGTCCTATATCTCTAGGTAGAGTGAAGTGTCCTGTGTGTGACTGTCCTATATCTCTATGTGAAGTGTCCTGTGTGTGACTATGTCCTATATCTCTAGGTGGAGTGAAGTGTCCTGTGTGTGACTATGTCCTATATCTCTAGGTGGAGTGAAGTGTCCTGTGTGTGACTATGTCCTGTATCTCTAGGTATAGTGAAGTGTCCTGTGTGGGACTATGTCCTATATCTCTAGGTGGAGTGAAGTGTCCTGTGTGTGACTATGTGTACGGTACCAAGTGGGAGATGAACAGACACCTGAAGAACAAGCATGGCCTCAAAGTGATTCAGAGTGACGTGCTTGGTCTCAACCAATGGGAGgtGGTGGAGCAGTCGGTGGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123445 lncRNA upstream 358 5573451 ~ 5575009 (+) True G108583
TU123483 lncRNA upstream 41248 5532987 ~ 5534119 (+) True G108616
TU123482 lncRNA upstream 42909 5529962 ~ 5532458 (+) True G108615
TU123480 lncRNA upstream 46301 5526704 ~ 5529066 (+) True G108613
TU123472 lncRNA upstream 66203 5508438 ~ 5509164 (+) True G108608
TU123450 lncRNA downstream 9911 5600663 ~ 5602911 (+) True G108588
TU123446 lncRNA downstream 14231 5604983 ~ 5606316 (+) True G108584
TU123488 lncRNA downstream 21664 5612416 ~ 5613037 (+) True G108621
TU123489 lncRNA downstream 22833 5613585 ~ 5614123 (+) True G108622
TU123490 lncRNA downstream 23469 5614221 ~ 5614705 (+) True G108623
XM_036935891.1 mRNA upstream 2749 5542994 ~ 5572618 (+) False dync1i1
XR_005034689.1 mRNA downstream 25244 5615996 ~ 5748096 (+) False jarid2a
XM_036935962.1 mRNA downstream 25252 5616004 ~ 5753847 (+) False jarid2a
XM_036935963.1 mRNA downstream 25252 5616004 ~ 5753847 (+) True jarid2a
XM_036935966.1 mRNA downstream 221495 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 250765 5841517 ~ 5854174 (+) False LOC110505528
TU123438 other upstream 32502 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 275434 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 438375 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 717093 4857911 ~ 4858274 (+) True G108048
TU122673 other upstream 763792 4808739 ~ 4811575 (+) True G107955
TU123575 other downstream 129213 5719965 ~ 5725579 (+) False G108682
TU123579 other downstream 129213 5719965 ~ 5725382 (+) True G108682
TU123616 other downstream 189462 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 309759 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 363134 5953886 ~ 5958769 (+) False LOC110505637

Expression Profile