RNA id: XM_036935962.1


Basic Information

Item Value
RNA id XM_036935962.1
length 6690
RNA type mRNA
GC content 0.51
exon number 19
gene id jarid2a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5615996 ~ 5753847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAACGTGGTACTGTATTCCTCGAGACTCACCGCTGGGGCATATTCCCCGGTCTATCGCGGTAGGAAGACGCTGCAGATAAACCCATGCCGTTACCATTACTAGCGGTGTGGGAGAGTTAACTCGTCGTCTGGCAGACACCGCAGAAACGTGTTTCTggattttggatttttttttttcgaGGGGGAAGCATTTTTTTGTACCTTTTAACTCCCGTCTGTGATATTCTTCAACACGGAATCTGCTGGGCCCTCAAAGCGTGTTTGATTTGTGCCTCGAGGATATCCAGGATACATGCCCTTTTCATTCGCATAATGGGAGATTGTCCGGTTCGTTGTTATGCATATGTTATAACGCCGTGATTTCAATTTGTGTTTCTTGCCGTGGATTGCAAAATTGGAATTTCTCTCCCAGGCGACTCAGCGAAAAGGGAAGTAGagacagcgtgagagagagagagggagagagtggggataaAGACACTGCCACCTCGCTGGATCACACCACGGGATTTAAATAATTGCATGTTCTAAAAAAAGGATATACATGTGGCTGCTATTCGGTGTTTAACCGAACCAATCCGGTTTGCAGGATGAGTAAAGACAGACCCAAAAGGAACATCATACAGAAGAAATACGACGACAGTGACGGAATCCCGTGGTTAGAGGAACGCGAGGTGAGGAAGGTGCTCTACCTTTCTCTGAAGGAGTTTAAGAACACCCAGAGGAACAAGGTGACAGATGGCCTCGGCACAGGAAACATCAACGGCTCTTTCCCACACAGCCATGGCTGCCGGTCAGGACCAGGGGCAGGCATACTGGCAGTCAACGGTAAAGCTGAGTGCTCACGCTGCTCGTCTCAAAGCAACGATGGTAGCAGCGAGTATTCCGGGGACGATCCAGTCAGAAAGAGACCACGGCTGCAGGCTCAGAGGAAGTTTGCCCAGTCTCAGCCCAGCTCCCCCAGTGCCACACCGATCAAGCTGTCTGAGACCCTCTTGCCCCCCAGCCCCACCTCTCCCCTCAGCGACCTCACCAGACGCAAGCCCAAGACCGAGGACTTCCTCACCTTCCTCTGTTTACGAGGCTCGGCTGCGTTGCCAGGCAACATGGCATACTTTGGGAGTGCCCAGGATGATGTGGATCTGGAGGACGaagatgatgaagaggaggagtgtgacGACAGGATGTCAGCTCACAGCCACAACTCAACTTCCTGTCCGTCCTCACAGCGGAAAAACAAAACAACGCCGGGGAAGAAGGTCTCCAATGGACATGTGTTGAATGGCCACAGCAGGTCCTTACGGGGGAAGGAGCTCTTCCTGAGGcccagagggagagaggctaTCCAGGCCAGAGAGAGGGCTGAGCGGGGAGAGGCCCGGAGGGAGAACCACAGGACCTCTACAGGACGCCCAGCCAGGACCTCCAGCACCACCCACAGTCTTCGCCACAGCAGGCCCAACAAGGAGCACCCAAAGCAGGTTTCAAAAGTGAACAGGCTGTCGCGGGTATCGTCAGCTACCGTACGCAACTCCTGTGCCAAAAAGCCGCCGGCCTCCCGACCACTGCTGTCCAGAACTGTGAAGTCCACAGCCACAGCGCTTCCCAGGGGCCACGTCCGCTACACCAAAGCCAGACTTCTCAAAGAGGCCAAACTCACCGTGGGCAAAAGAGCCTCCTCCAAAGCTCGCCAACCCCTGAAGAACCAACGGCGCTCTGCCTGTGGCAGTGCCCGCCGCCACCCACGCCCACCACACTCCAACTCAGGAAAACTCTCAAGTGGCGATGCAAAGACTCCCAACAAACAGAAGGTACAATCCAACAAGGCAGCCGGCAGGTGTTGCCTACAACGAGTCAACGGGCAGCTTCACCCACGCCGATGTGGCGGTAAGCAGGTACTGCAGGGGCGTGAGGGCGTCAGACACTCCAAGCGACGTCTGGGGCTCCCGGCTGAGGAGAGTCCAACAGAGACACCGGAGTCTTCGCCGGAGGTCAAAAAGGTTAGACTGCAGGTCAATGCCCCGGAGACGCGAAGCAGCAGGAAGGTCAATGTCCAGGAGAAGGCTGTGGCGGGGTCCGGCAGCCATCTTGGTAAGGTCACGTCATCCCGACCTTCCTCCTCGGAGCAAAGACCCAAACGAGCCTCCGCTGGCAAGCTGATGTTGACCCGACAAGCACAGCCCATACCccctactgctaatactactactactgctaatactacacCACCAGCTAAGAACACTACTTCTAAGAAAACTTTCCAGGGCACTTCCAAGAACACTTCCCATGTCACTTCCAAGGGCACTTCCACCTCCACTTCCACTAGCTCAGCAGCCAAGGTGAAACCAGGCACCAGCAGCCCAGCTAAACCAGCAGCAGAGCCTAAAGCAGCAGAGAGGCAGCGGGAGAGTGGGGAGAAGAGAGGTGCAGCACCACCCCCTCCCCCGCCCCTAACCGAGGTGCCAGTGTTCAGACCCAGTCTGGAGGAGTTCCACGACCCTCTGGTGTATGTGGAAGCGGTGCGCGGGCAGGCAGAGAGCTATGGGCTGTGCAGGGTGGCTCCTCCTCAGGACTGGAGGCCAGAGTGCAAGCTGAAAGAGGACATGAGGTTTGTGACCCAGGTGCAGCACATCCATAAGCTGGGTCGGCGCTGGGGGCCCAATGTACTCCGGCTGGCCTGCATCAGGAAACACCTCCAGGCCCAGGGCATCTCCATGGAGGACCCCCCGCTCATAGgCGGATGTGAGTTGGACCTGGCCCGGTTCTTTCAGCTCATCAACGACATGGGCGGCATGCAGCAGGTCAGCGACATGAAGAAATGGAATAAGCTAGCCGACCAGCTCCGTATCCCCAAGACTGCACAGGATCGTCTGGCCAAGCTGCAGGAGGCCTATTGTCAGTACCTACTGTCCTACGACTCCCTGGACCCCGCTGAGCGCATCCGCCTGGAGAGGGAGGTgctggaggagaaggggaggctggagaagaagagagggccCCTGGAGGGCCACTCAGATGACTCCCAACAGAGCCTGCTCCAGCTGCCCCGCTGTGAGCCCAAGAATGGCCTGGTAAACGGGGTGATCCGGAGGAACGGCCTGCCCAGGAACCTGGAGGAAGGAGCgaaagaggggaagaaacagGAGAAGGACATGTGGCTGAGGTCCAGCAGGAGGAGACTGTTCTCtcaggagaagaaaggaggaagaggaggagcagaggaggagaaagagttTCTTAGCGACCAGCACAAGTGTATATACAGGGGGAAGTCGGTTTCTCTCACTACGTTCTACAGGACAGCCAGGAACACTATGAACATGTGTTTCAATAAGGAGCCTGGGACGGCTGAGGTGGAGCAGGAGTACTGGAACATCGTGGAGCAGAGGGAATGTCATGTTGCCGTGCACTGTGGGAAAGTGGACACTAAAACTCATGGGAGTGGCTTCCCAGTTGGAAAGTCTGAGACGTTTTCAAAACATGGATGGAACCTTACAATCCTTCCCAATAATTCAGGATCCATCCTACGCCATCTTGGTGCTGTGCCAGGAGTCACCATTCCTTGGCTGAACATCGGCATGGTCTTCTCTACCTCATGCTGGTCGCGAGACCATCACCGCCTTCCATACATTGACTACTTACACACGGGTGCTGACTGCATTTGGTACTGTATTCCTGCTGAGGAGAAGGTGAAGCTGGACAAGGTGGTTCACACACTACTGCAGGCTAATGGAACCCCAGGACTGGAGATGTTGGAGAACAACATCATGATCTCTCCGGAGGTGCTGTGTCGAGCGGGGGTCAAAGTGCACCGGACCGTCCAGCAGAGTGGCCAGTTCGTCGTCTGTTTCCCGGCGGCGTTCGTCTCCAAGGTGTGCTGCGGCTACAGCGTCTCCGAGACAGTGCACTTCGCCACCCCCCAGTGGCTGAACACGGGATACCAGGCTGCCAAGgagctGAAATGTCGACGCATAGAGAGGTCCTTCTCCATGGAGAAGTTGCTGTACCAGATCGCAATGTCAGAATCCAAACGGGAGAATGGTGTCATTCTGAGTACCATGACCTCACTTCTCAAAGACCTCAGGGATACAGAGTTGAGACAGCGCAGGGATCTGTTTGACGCCGGGCTGCGGTCTGTTGCCCGCTACTGTAGCCATGACAACCAGGCCTCGTCAGAGAGCAGGAGGATCCAGCGCCAGTGGCTGAGGCTCGACCCCTCAGACCGACGCTGCCAAGTGTGCCAACACCTCTGCTACCTCTCCATGGTGGTTCAGGAGAGTGAGAACGTGGTGTTCTGTCTGGAGTGTGTCCTGCTGTACGTACAGAAACACAAGTCCTGCCGAGGCCTCAAAATGATGTACCGTTACGACGAgGACCAAATCAACCATCTGGTGAGCAGGGTGTGTGGGAGAGTGCTGGAGAAGAGCGGCGCTATGAAgaggagagggacgagaggaCTTCAGGGCCCCGGTGAGGCGTCCACCCCGGCCAAACGCAGCGCCCGAAACAGAACCTCCATCACTGTGTCCCTCACCcgcctcccctcctccaccctgcccAAGACCGCCCTCAGCTCTAAATAACTCACATCATGGGCCGCGTTCCATTACTTCACATCCTTCCTTCCTGGGTTCTTTGAGGTAAACACAGATGTACAAGTGGTTAGGTTATTACCACCCAATTACTGTCACCAATCCAACCGATTCACATCTGTGATTACTtcaaaggaaggaaggaaggtaggAAGGAAGGACTTCTGAAGTGTTCCAACAGGACCAGTGCTTCACTACGGTACATTTCTCTCTGCTCAGTGTGGAGAATGTGCTCCTTAAACCACGGCTTTTGCActagagtaaaaaaaaaacatgtttttaagaGGCATTAATGGCTGGGTTCAGTTCCGTATCGGAGGATCCGCTTAACAGCTCAATTGAAATTTGAAGGCAACGTTCCCGCGTATCTCAGCTCAattggaaattagctttaaaaaatgTTAGCGCGGATCTTCAGCCGTATGGATGGAAACCCAGCCCTTCGTCCAATACTGTATATTGTATCTAGATATCACAATATCCTCCTAGCTACACCTACTGTTATTACCTACAGACTTCACTTCCCTGGTGCTACATCTTGGTGCTCAATTTATACTGTCattggtgtagtagtagtaataataatgatCATTTCTCCTTTTGCTCAAAGCCATTGGACTGCATCCTGAACTGTGAACACGTTTGTAGAACTTGTTACCAATAAGTGGATTCTACACACAGTTTTGCGTTTAGACTCCAACCAGTAATAAGGCTCTTCAGGGGTTTGTAATACATGCATTACGATACAAAGATTTTTCCAGCGGAGCGCAAAAAGTGGGTTGTTGTTTATTAGTGCTAAACGTAGCAAAACGTTTTTgcaaacagaaaaaaaaaaacaagcgtTCCTTATTGGACatgttcaggtagtccctcctcGTTTTGGCCCttttgcttccgtttggttcctagtgaatacgacCCTGGCCTCAGTATTAAACAGGGCCCCTTCTCAGATCATTGATGTTATAATTATTTAGAGAATTGGCCAAGAGTGGAACGGTAATCATGGGCTTCACACCGCTCATCTGACCATTTTGGTGTGAAACACTgtgcctaaaaaaaaaaaatgcatactAATCATTTTTAATCACTCCTGGTGCCGATAGTTTTTGTTTTGTGACCAAGTTATCCACTCTAGACCCTTACAGGCTCTTGACCTGCAACTCTTGGGTCTGCGGcactgcgttccaaatggcagcctatcccCTATTTAGAGCACTAATTTTGACCCGAGCCCCAagggcactatataaggaatagggtgccatttgggagagtCACAGTCCAGGTGTTTTATCAAAGAACAAAAAGTGAAAACCACAACAGCATTGTACATATAAAACATTGTCAATGTCTAAAGATACATGTACCTGAGCCTTTTAAGGAATGGAATGCAGTGTTTTGGAGTAGGGGATTTATGAAGAAAAagccttaccccccccccccccactccaccaccaccagTTACTTCATCTGTGGCCCCGTATACACTCAACGGTTGTGATACAAAAAAACATCTAGAATTACACAAGCGTTGTGGAGACAGTGAAATGGTTGTGTAAACATTTTTTTGTgcagacaaaaaaatatatatatattgtatcacAACTCTTGTGTCAACTGTGTTGGACATTAGTTGTATGGGGCCAGGGTTGCCCTGGTAACACGTATGGAGAAGTGCTGCATAGTTTGAATCCCttcgttttttttttacctaaacTTTGTTTTTACGAAAAGGGAAAATAAGTAGAAGAATAATAAAAATGGTAAAATCTACTATGTACAGAAGGAGTAACTCCTGTTGTTGCACTCCAGCCTCGCGACAGGAGTCCTTTAAAATCAGCTTGTTGAGACCCCTTACAAAAACAATCCATTTTCAAAGTTCACGTATATACAGAGTTGGATGTTTTTTTAAAAAGCGtgcttaatgtttttttttttttttttacaacaggcTCATTACAGCCGACCGTCTCATTTCTTATCTCGGATTCTGTTTTCCTTCCATGCTGATTCAAGTTGGACAATGACCgatttattttctattgtatttGTTAGTACCCATTAAGGTTTGAATAAAAAGGTTTGACAGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123490 lncRNA upstream 1299 5614221 ~ 5614705 (+) True G108623
TU123489 lncRNA upstream 1881 5613585 ~ 5614123 (+) True G108622
TU123488 lncRNA upstream 2967 5612416 ~ 5613037 (+) True G108621
TU123446 lncRNA upstream 9688 5604983 ~ 5606316 (+) True G108584
TU123450 lncRNA upstream 13093 5600663 ~ 5602911 (+) True G108588
TU123519 lncRNA downstream 3157 5757004 ~ 5757953 (+) True G108643
TU123520 lncRNA downstream 4755 5758602 ~ 5760920 (+) True G108644
TU123593 lncRNA downstream 14099 5767946 ~ 5769067 (+) True G108694
TU123605 lncRNA downstream 20533 5774380 ~ 5774708 (+) True G108697
TU123607 lncRNA downstream 22060 5775907 ~ 5779231 (+) True G108698
XM_036935845.1 mRNA upstream 23751 5575379 ~ 5592253 (+) False LOC110506279
XM_036935846.1 mRNA upstream 23751 5575381 ~ 5592253 (+) False LOC110506279
XR_005034680.1 mRNA upstream 25252 5575366 ~ 5590752 (+) False LOC110506279
XR_005034681.1 mRNA upstream 25252 5575367 ~ 5590752 (+) False LOC110506279
XM_036935852.1 mRNA upstream 25353 5575366 ~ 5590651 (+) False LOC110506279
XM_036935966.1 mRNA downstream 58400 5812247 ~ 5839646 (+) True mylipb
XM_036936009.1 mRNA downstream 87670 5841517 ~ 5854174 (+) False LOC110505528
XM_036936052.1 mRNA downstream 200134 5953981 ~ 5955445 (+) False LOC110505637
XR_005034712.1 mRNA downstream 222353 5976200 ~ 6002265 (+) False LOC110505679
XR_005034714.1 mRNA downstream 224419 5978266 ~ 5979890 (+) True LOC118937375
TU123443 other upstream 33554 5581293 ~ 5582450 (+) True LOC110506279
TU123438 other upstream 73139 5506546 ~ 5542865 (+) True ptp4a3b
TU123151 other upstream 316071 5296179 ~ 5299933 (+) True G108354
TU123045 other upstream 479012 5136356 ~ 5136992 (+) True G108280
TU122792 other upstream 757730 4857911 ~ 4858274 (+) True G108048
TU123616 other downstream 26367 5780214 ~ 5782644 (+) True G108702
TU123653 other downstream 146664 5900511 ~ 5900950 (+) True G108733
TU123496 other downstream 200039 5953886 ~ 5958769 (+) False LOC110505637
TU123500 other downstream 200039 5953886 ~ 5958813 (+) False LOC110505637
TU123491 other downstream 200098 5953945 ~ 5958769 (+) False LOC110505637

Expression Profile