RNA id: XR_005034714.1


Basic Information

Item Value
RNA id XR_005034714.1
length 1173
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118937375
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5978266 ~ 5979890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACATTtgtcatacattttttattttttaataagaGCACAGAAATGTACAGGGCTATTAGGGCAGATCCCAGATCAGCTCATACGTCTTGGAGCAAGGAGAGGATGTGCACCATAGTACACTAAATTAAATAGGCTATCTTCACAATGTGCAACTTGAAAGTCAAAATCAATGTTTAACCTACTGCATATCTGAAAATATATGGTTACACTTTGGCAGTCCCTTTACATTAGCATAGGAAAGTCCTCTCAGTCTTGTATCAACAAAAAGCCATCATCTTGGAATGAAGCCCGCCATTATGACTAAGCCTCGATAGGCAAATAGCTTATAACAAAAtaaggataaataaaataaatacacttCAAAATAAACAGGCACTCAATTTTCCCATTCCACACTAGAACCACAACAGTCCCCGAACACAAGTCGCATAATAAACTACCCCTTATGTACACAGGCAAGTCAAGGCGGCGGGTTTCGCTAACTCTGTGCTAATTTAGACAGCCGTTATTCACGTTTAACTACTATAGAATAAACTGAGAAAAAGTGCAGTAGGGGAGAGATGTACTATTTGATGTGACTAGAGGACTGACCCTCagagaagtggaggagagatGTACTATTTGATGTGACTAGAGGACTGACCCTCAGAGAAGTGGGGGAGAGATGCACTATTTGATGTGACTACAGGACTGACCCTCAGAGAAGTGGGGGAGAGATGTACTATTTGATGTGACTACAGGACTGACCGTCagagaagtggaggagagatGCACTATTTGATGTGACTACAGGACTGACCCTCAGAGAAGTGGGGGAGAGATGTACTATTTGATGTGACTACAGGACTGACCCTCAGAGAAGTGGGGGATAGATGTACTATTTGATGTGACTAGAGGACTGACCCTCAGAGAAGTGGGGGAGAGATGTACTATTTGATGTGACTACAGGACTGACCCTCAGAGAAGTGGGGGATAGATGTACTATTTGATGTGACTAGAGGACTGACCCTCAGAGAAGTGGGGGAGAGATGTACTATTTGATGTGACTAGAGGACTGACCCTCAGAGAAGTGGGGGAGAGATGCACTATTTGATGTGACTAGAGGACTGACCCTCAGAGAAGTGGGGGAGATATGTACTATTTGATGTGACTAGAGGACTGACCCTCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123503 lncRNA upstream 16141 5955703 ~ 5962125 (+) True G108627
TU123524 lncRNA upstream 29925 5947511 ~ 5948341 (+) True G108648
TU123683 lncRNA upstream 33275 5943752 ~ 5944991 (+) True G108753
TU123672 lncRNA upstream 37010 5941005 ~ 5941256 (+) True G108752
TU123656 lncRNA upstream 66330 5911688 ~ 5911936 (+) True G108736
TU123691 lncRNA downstream 3386 5983276 ~ 5983771 (+) True G108756
TU123693 lncRNA downstream 13643 5993533 ~ 5993799 (+) True G108758
TU123695 lncRNA downstream 15912 5995802 ~ 5996126 (+) True G108760
TU123729 lncRNA downstream 103246 6083136 ~ 6085913 (+) True G108789
TU123710 lncRNA downstream 107286 6087176 ~ 6087617 (+) True G108773
XM_036936052.1 mRNA upstream 22821 5953981 ~ 5955445 (+) False LOC110505637
XM_036936009.1 mRNA upstream 124092 5841517 ~ 5854174 (+) False LOC110505528
XM_036935966.1 mRNA upstream 138620 5812247 ~ 5839646 (+) True mylipb
XM_036935962.1 mRNA upstream 224419 5616004 ~ 5753847 (+) False jarid2a
XR_005034713.1 mRNA downstream 19040 5998930 ~ 6002265 (+) False LOC110505679
XR_005034711.1 mRNA downstream 21332 6001222 ~ 6002265 (+) False LOC110505679
XM_036936117.1 mRNA downstream 23102 6002992 ~ 6049501 (+) False setd2
XM_036936127.1 mRNA downstream 23102 6002992 ~ 6049501 (+) True setd2
XM_036936174.1 mRNA downstream 112189 6092079 ~ 6093940 (+) False LOC118937376
TU123500 other upstream 19453 5953886 ~ 5958813 (+) False LOC110505637
TU123495 other upstream 19453 5953945 ~ 5958813 (+) False LOC110505637
TU123496 other upstream 19497 5953886 ~ 5958769 (+) False LOC110505637
TU123491 other upstream 19497 5953945 ~ 5958769 (+) False LOC110505637
TU123497 other upstream 19497 5953945 ~ 5958769 (+) True LOC110505637
TU123521 other downstream 19295 5999185 ~ 6002194 (+) True LOC110505679
TU123712 other downstream 77106 6056996 ~ 6058335 (+) True G108775
TU123748 other downstream 217042 6196932 ~ 6199341 (+) True G108805
TU123869 other downstream 302181 6282071 ~ 6285940 (+) False G108874
TU123867 other downstream 303814 6283704 ~ 6285940 (+) True G108874

Expression Profile